Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1047 ATGACCGTTACTCTCTTCatcctccttttcttcttctttttccaccCCGCCGTTTCTCTTTCCTCCGATGGCATCGCGCTTCTCACTCTAAAATCCGCCGTGGACGCCTCCGGCGCCGCCGTCTTCTCCGACTGGAACGACGGCGACGCCACGCCGTGCCGGTGGTCCGGCATCACGTGCGCGAACGTCTCGGGCATCCCGGAGCCGCGTGTCGTCGGCGTCGCGCTCTCCGGCAAGGGCCTCCGCGGCTACCTCCCGTCGGAGCTCGGCACGCTCCTCTACCTCCGCCGCCTCAACCTCCACACCAACGCCTTCCGCGGCGCCATCCCGGCGCAGCTCTTCAACGCCACCGCGCTCCACAGCGTCTTCCTCCACGGTAACAACCTCTCCGGCAACCTCCCCCCCTCCGTCTGCACCCTCCCCCGCCTCGAAAACCTCGACCTCTCCGACAACGCTCTCTCCGGCGCAATCCCCGACACGCTCGGGAACTGTTCCACCCTCCAGCGCCTAATCCTCGCCCGGAACAAGTTCTCCGGCGAGATTCCGGCGAGTCCGTGGCCGGACCTGAAAAATCTAATCCAGCTCGACCTATCCTCGAACCTTCTAGGAGGTTCGATCCCGGACCAGCTCGGTAACCTGAAATCCCTAACCGGAACCCTAAACCTCTCGTTCAACCAATTATCTGGCAAGGTTCCTAACTCTCTAGGGAATTTGCCTGTTACGGTGAGTTTCGATCTTCGGAACAATGATTTGAGTGGTGAGATTCCCCAAACGGGGTCGTTTTCGAACCAGGGCCCCACCGCGTTCCTCAACAACCTGAACCTGTGCGGGTTTCCTTTGCAGAAACCCTGCACAGGTTCGGCACCGAGCGAACCAGGGCTCAGCCCTGATTCTCGCAGACCGGTGCGCCGGTCCGCGAGAGGGCTGAGCCCcggtttgattattttgatctCGGTGGCTGATGCTGCCGGGGTGGCTTTGATTGGGCTTGTGGTGGTGTATGTTTATTGGAAGAGGAAGGACAAGAACAATGGGTGTAGCTGCACTTTGAAGAGGAAGTTTGGTGGggagaatgagaaaatgagtTTGTGTTGTTGGTGTAATGGGTTGAAGAGTGATGATTCTGAGGTGGAGGAGGGGGAGAAGGGAGGGGGGCAGGGGGATTTGGTGGCCATTGATAAGGGTTTTAACTTTGAGCTTGATGAGTTGTTGAGGGCTTCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGAATTGTGTATAAGGTGGTGCTGGGGAATGGGGTGCCTGTGGCTGTGAGGAGATTGGGGGAGGGTGGGGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTCAAGCCATTGGCAAAGTGAAGCACCCCAACATTGTGAGGTTGAGAGCCTACTATTGGGCTCCTGATGAGAAGCTTTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGGGAGAAATGGTCAACCATCTCCGAATCTTTCATGGTCAACCAGGCTGAGGATCATCAAAGGAACGGCCAGGGGTTTGGCCTATCTCCATGAATGCAGTCCAAGAAAATTTGTTCATGGTGACATCAAACCCTCCAACATCCTCCTTGACACGGACTTCCAACCCCACATTTCTGATTTTGGTCTTAACAGGCTGATCAGCATCACAGGCAACAACCCCTCCTCTGGTGGCTTTATGGGAGGAGCTATTCCTTACTTGAAGCCATCACAAACAGAGCGAACTAACAACTACAAAGCCCCTGAGGCTCGAGTCCCAGGTTGCAGACCCACCCAGAAATGGGATGTGTATTCATTTGGAGTTGTATTACTTGAATTGCTTACTGGGAAATCCCCAGATTCTTCACCAGCCGCATCAACTTCCATGGAAGTCCAAGTCCCTGACTTGGTGAGGTGGGTTAGGAAAGGGTTTGAACAAGAAAGTCCATTGTCCGAAATGGTTGATCCATCGATGCTCCATGAAGTGCATGCCAAGAAAGAGGTACTGGCCGTGTTTCATGTAGCACTACAATGCACCGAGGGAGACCCTGAGGTCCGGCCTAGAATGAAAACTGTCTCTGAAAATCTTGAAAGAATTGGATCATAA 2115 0.5314 MTVTLFILLFFFFFHPAVSLSSDGIALLTLKSAVDASGAAVFSDWNDGDATPCRWSGITCANVSGIPEPRVVGVALSGKGLRGYLPSELGTLLYLRRLNLHTNAFRGAIPAQLFNATALHSVFLHGNNLSGNLPPSVCTLPRLENLDLSDNALSGAIPDTLGNCSTLQRLILARNKFSGEIPASPWPDLKNLIQLDLSSNLLGGSIPDQLGNLKSLTGTLNLSFNQLSGKVPNSLGNLPVTVSFDLRNNDLSGEIPQTGSFSNQGPTAFLNNLNLCGFPLQKPCTGSAPSEPGLSPDSRRPVRRSARGLSPGLIILISVADAAGVALIGLVVVYVYWKRKDKNNGCSCTLKRKFGGENEKMSLCCWCNGLKSDDSEVEEGEKGGGQGDLVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVRLRAYYWAPDEKLLISDFISNGNLATALRGRNGQPSPNLSWSTRLRIIKGTARGLAYLHECSPRKFVHGDIKPSNILLDTDFQPHISDFGLNRLISITGNNPSSGGFMGGAIPYLKPSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPAASTSMEVQVPDLVRWVRKGFEQESPLSEMVDPSMLHEVHAKKEVLAVFHVALQCTEGDPEVRPRMKTVSENLERIGS 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1047 704 Pfam Protein kinase domain 410 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1047 704 Gene3D Phosphorylase Kinase; domain 1 393 480 - -
Ssu3g1047 704 SMART serkin_6 409 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1047 704 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Ssu3g1047 704 Gene3D Ribonuclease Inhibitor 20 185 IPR032675 -
Ssu3g1047 704 Gene3D Ribonuclease Inhibitor 186 286 IPR032675 -
Ssu3g1047 704 PRINTS Leucine-rich repeat signature 189 202 - -
Ssu3g1047 704 PRINTS Leucine-rich repeat signature 143 156 - -
Ssu3g1047 704 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 3 703 - -
Ssu3g1047 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Ssu3g1047 704 SMART LRR_typ_2 140 164 IPR003591 -
Ssu3g1047 704 SMART LRR_typ_2 189 213 IPR003591 -
Ssu3g1047 704 SMART LRR_typ_2 92 116 IPR003591 -
Ssu3g1047 704 CDD STKc_IRAK 411 702 - -
Ssu3g1047 704 ProSiteProfiles Protein kinase domain profile. 405 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1047 704 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Ssu3g1047 704 SUPERFAMILY Protein kinase-like (PK-like) 410 699 IPR011009 -
Ssu3g1047 704 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 703 - -
Ssu3g1047 704 SUPERFAMILY L domain-like 21 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1047 Ssu-Chr3 24510558 24514925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1047 16 702 Receptor kinase-like Gene Family AT1G67510 69.034 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu3g1047 Pkinase 2.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1047 - - gmx:100795021 1278.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1047 3 24510558 24514925 Ssu4g2429 4 60743079 60748319 PCT