Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1045 ATGAAGACTAATAATAACGTTGCTGGGAAGAGGAAATCATGCAAGAGACGCAGTGGTGGAAGTGAATCTGTGGAAGACACTCTTGAAAAGTGGAAGGAGTATAACAGGCAGCAACAACTTGGCTCAAGAGAAAATGGGGTGGAGGTGATTCACAAAGTTCCTGCTAAAGGCTCGAGAAAAGGGTGCATGAGAGGTAAGGGAGGGCCTCAGAACTCTGATTGCAAGTTCAGAGGTGTGAGACAGAGGATTTGGGGCAAATGGGTTGCTGAGATTCGCGAACCTATCAATGGCAAGCTTGTGGGTGAGAAAGCAAACAGGCTTTGGCTTGGCACTTTCTCTACTGCACATGAAGCTGCTCTTGCTTATGATGAAGCAGCTAAGGCCATGTATGGCCCTTGTGCCCGTTTGAATTTTCCTGAGCCTTCTGAGGAGCCAATAGACTCTAATGGATCATCATCTAGTGGATGTGATAAAAAATCACCAAGTGGTTCTTCAGACACCTTGAATGGTGGTGATGTAGCAAAAGCTGAGGAGTTGGAGGGGAACCTTCATCAGTCTCGTGAAGAGAAACCAAGATTTTCTAAGGTTGGTGTTTTTGAGGAAACAGAAGAGAAACCGGTTCTTTCTGGAGGTTGTGTGGCTGATGACTCAATAGAGGAGTTGAAGGAAATGACAACTGGCTTTGAACAATGTCAAAGAAGTGAAGAGTGTAAGGTAATAACTTCGAAGAATGTTAAGTCTGAAGTACCTGGAGAAAGTGGAGGAATAGAGAGAGAATTAGAGGGGGTTTTGAAAAAATCTGGAATAAGTGAAGAGGGTAATCACTTGCAGAAGGAGCCTATGGATATGAATACAAGAGCTAACTATTGTAGCTCTTCTGATGCTACTGAACATGAGATTCTGGTAAAGTGTGAAGAAACAAGAGGAGAATCAGTTGAAACTTTGAAATCTAGTGAGTTGAGCTGCAGCAACCATTGCCTCGGATATATGCATAATATGCTGCCAGATAGCAATCCAAGACCAAATTCTGAGCATTTTAATAACACCCAAAGTGAGGCATCAATTGCAAAGAAACACACGGAGGAAGTAATTTCTGAAATCCTGGGACTATGCCACAGAAAGTGCTTGAAGACTAGCCATGCTCAGTCACCAAATGAGCAATATAGAAGTGAAAATTTTGATGAGATGAAAACTAAGCTTAAGGGTTTGGAATGCAAGCTGAAAGCACATTCTATTCATTACAAGAATCAAGCACCCATAGTTGGGCATTCCAATTATCCTTCTATGCAGGGAATTCATCTGTTTGGTGGTGACACTGTTGGACCAATTGAAAGTATGTCCCAAGTTGAGGCTTTGAACATCAATATAAACAGAAACTCTAAATTGCTAGAGAAAGGAAGTAATGGAAATGCACTAACTGGATTTAGTTCTGGCCATAACAGGAAGTTGTGTGATCTTTCTCAACAGCTACACAAACTTGGTGGTTACCTACCTGAACATTGGAACAGTATGCAGTTTGCAGACTTGGAAGCGGGTTATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAAGAGCAGAAGTTACTCGATATATGCTTTCCAAATATAGGATCCTAG 1629 0.4162 MKTNNNVAGKRKSCKRRSGGSESVEDTLEKWKEYNRQQQLGSRENGVEVIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTAHEAALAYDEAAKAMYGPCARLNFPEPSEEPIDSNGSSSSGCDKKSPSGSSDTLNGGDVAKAEELEGNLHQSREEKPRFSKVGVFEETEEKPVLSGGCVADDSIEELKEMTTGFEQCQRSEECKVITSKNVKSEVPGESGGIERELEGVLKKSGISEEGNHLQKEPMDMNTRANYCSSSDATEHEILVKCEETRGESVETLKSSELSCSNHCLGYMHNMLPDSNPRPNSEHFNNTQSEASIAKKHTEEVISEILGLCHRKCLKTSHAQSPNEQYRSENFDEMKTKLKGLECKLKAHSIHYKNQAPIVGHSNYPSMQGIHLFGGDTVGPIESMSQVEALNININRNSKLLEKGSNGNALTGFSSGHNRKLCDLSQQLHKLGGYLPEHWNSMQFADLEAGYDYSFLNPDYDFGLLEEQKLLDICFPNIGS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1045 542 SUPERFAMILY DNA-binding domain 75 139 IPR016177 GO:0003677
Ssu3g1045 542 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Ssu3g1045 542 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Ssu3g1045 542 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Ssu3g1045 542 MobiDBLite consensus disorder prediction 1 26 - -
Ssu3g1045 542 MobiDBLite consensus disorder prediction 140 171 - -
Ssu3g1045 542 MobiDBLite consensus disorder prediction 144 169 - -
Ssu3g1045 542 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Ssu3g1045 542 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 412 - -
Ssu3g1045 542 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Ssu3g1045 542 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 412 - -
Ssu3g1045 542 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Ssu3g1045 542 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1045 Ssu-Chr3 24490321 24492230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1045 15 270 AP2-EREBP Transcription Factor Family AT2G40340 39.630 3.30e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu3g1045 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1045 - - gmx:100500303 838.95