Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1032 ATGGGAGGGTGTTGCAGCCACGAAGTTTCGGTTCGAGGGAGGGTGGAAAGCGAGGTGGATGATAGAGAATATGAGTGTGATCGTGAAAATGATGTGTCTTACGAACATGGTGGAACATTGGTCAGGTTAAAAGGATCCTCTAGGTTTGTATCAATGTACACCCAACAGGGTCAGAAAGGTGTGAACCAAGATGCAATGACAGTTTGGGAGGACTATACTGGAGAAAAGGATGTGATCTTTTGTGGTGTGTTCGATGGACATGGTCCTCTAGGCCACAAGGTTTCACAATTTATTCGTGACAATCTACCCTCAAAACTATCTGCAGCAATTGAAATCTCACAACAGAAGGCACGCAAATATTATGATGCTAATGATGCAGAAACTGCCAGTTATGATGATGTCTACGATGAGAATAACCCCAACATGTCCCTTGCTGCATGGGAGGGATGCTTTCTGAAATCCTTTGATGAGATGGATGAGTACCTTGCTCAGGAAATTAACACTGACAGCTATTGCAGTGGTTGCACCGCTGTAACTTTAATTAAACAGGGTGACCAGTTGATAGTTGGCAATTTGGGTGATTCTCGTGCGGTTCTTTGCACAAGGGATGGAGACCAACTCATTCCTGTTCAACTCACTGTTGATTTGAAACCAGACATTCCAAGTGAAACCTCAAGAATCGTTAACTGTGAAGGAAGAGTTTTTGCAGCAGAAGAAGAACCAGATGTGTACAGAATATGGATGCCTGATGATGACTGCCCTGGACTAGCCATGTCGAGGGCCTTTGGGGACTTTTGCCTCAAAGATTATGGCCTCATCTCAGTTCCTGATGTATTTTACAGAAAAATTACCCCTGAAGATGAATTTGTGGTTTTGGCAACTGATGGGGTATGGGATGTGCTGACTAACAGTGAAGTGATGGACATAGTTGCTTCGGCACCAAGGAGGTCCATAGCAGCCAAGTTGCTAGTAAAGCGTGCTGTTAGAGCCTGGAGATGCAAGTACCCTGGTTCCAAGGTTGATGATTGTGCTGTCATATGCTTGTTTCTGGATAACCAGCCTGTTTTATCCCATTCACAATCCAATACGAGTAGAAGAAATAGACAGCGCAGCAAGCACATGCATCGCTCTAAATCTGCTAGAAATGAAGACACTGAAACTGTGGATGCCAAGGTTGGGGTGGAACTAGATGAAGAATGGAAAGCACTTGGAGGGTTGGCAAGAGCCAACTCTTTATCAAGACTTCCACGCCTTGATAGGGGTATGAGTAAACGGCAATCATCCAAGTACCTTACAGGGAGTTGA 1305 0.4467 MGGCCSHEVSVRGRVESEVDDREYECDRENDVSYEHGGTLVRLKGSSRFVSMYTQQGQKGVNQDAMTVWEDYTGEKDVIFCGVFDGHGPLGHKVSQFIRDNLPSKLSAAIEISQQKARKYYDANDAETASYDDVYDENNPNMSLAAWEGCFLKSFDEMDEYLAQEINTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCTRDGDQLIPVQLTVDLKPDIPSETSRIVNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLISVPDVFYRKITPEDEFVVLATDGVWDVLTNSEVMDIVASAPRRSIAAKLLVKRAVRAWRCKYPGSKVDDCAVICLFLDNQPVLSHSQSNTSRRNRQRSKHMHRSKSARNEDTETVDAKVGVELDEEWKALGGLARANSLSRLPRLDRGMSKRQSSKYLTGS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1032 434 ProSiteProfiles PPM-type phosphatase domain profile. 49 350 IPR001932 -
Ssu3g1032 434 SMART PP2C_4 39 348 IPR001932 -
Ssu3g1032 434 Pfam Protein phosphatase 2C 73 327 IPR001932 -
Ssu3g1032 434 MobiDBLite consensus disorder prediction 357 388 - -
Ssu3g1032 434 SUPERFAMILY PP2C-like 45 352 IPR036457 -
Ssu3g1032 434 CDD PP2Cc 48 350 IPR001932 -
Ssu3g1032 434 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 410 - -
Ssu3g1032 434 MobiDBLite consensus disorder prediction 414 434 - -
Ssu3g1032 434 PANTHER ALPHABET, ISOFORM E-RELATED 1 410 - -
Ssu3g1032 434 Gene3D - 42 352 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1032 Ssu-Chr3 24197966 24200801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1032 1 354 PP2C-type Phosphatase Gene Family AT5G01700 53.672 3.94e-134 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1032 - - gmx:100783603 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1032 3 24197966 24200801 Ssu3g1032 3 24197966 24200801 ECH
Ssu3g1032 3 24197966 24200801 Ssu4g2443 4 61372866 61375652 PCT