LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g1025	ATGACCATGGGTGATCATAATAACTGGGGAACTTCTGAACTTGATCTTCATCAAGTTGGACTTGATGTTCCCAAATTCAAGTCTGCTCAACCTCCCTCACTACCCCTCTCTCCCTCTCCAATCTCCCCTTCTTCTTACTTGGCTTTTTCATCTGCTTTCAGCCCATCTGAGTTCTTGAACTCACCCTTGTTTCTTACTTCTCCAAATATTTTTGCGTCTCCTACTACTGAGGCTTTGGTTAGCCAGAGCTTCAACTGGAGGAACAGCTCAGGCGAAGAACAACAACGTGACAAGGAGCATGAGAAAAACTACTCTGACTTCTCTTTCCAAACCCAAATTCAATCTTCCTCAAGCATGTTTCAAATGCAGGAACCACTTAAGAAACAGGACATATGGAGATTCAGTGAACCTACAAAGCAAACTGATTTTTCATCTGAGAGGATAGCAACAAAATCTGAATACCCACCAATTCAGAGCTTTTCCTCAGAAATGGCAGCAGGAAAAGCAGAAATACAAAGTAATTCAGTTCCTGAGTCTGGTTATTTTGACTACACTAATGCATCTCAGTCTGTTAGAGAACAAAAGAGATCAGATGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAATGAAGAAGAAAGTAGAGAGGTCTTTGGATGGACAAATTACTGAAATAGTATATAAGGGCCAGCATAATCACCCAAAACCACAGTCCAGAAGAACAAACTCTCAATCAATTCACCAACCTACTTCATCTTGCACCAACTCGGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGATCATTTCTCCATACAAGATTCTTCAGCTTCTGTTGAAGAGGAAGAGTTTGAGCAAACATCACAAACCACTTATCCTGGAGGAGATGAAGATAACCTTGGACAAGATGCCAAAAGATGGAAGGGAGATAATGAAAACGATGGCTATTCTGCCTCAGGGAGTAGAACTGTTAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGTGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTCAAAGGAAACCCAAATGCAAGGAGCTATTACAAATGCACAGCCCCAGGTTGTTCAGTGAGAAAACATGTTGAGCGAGCTGCACAAGACATCAAATCTGTGATCACGACTTATGAAGGGAAACACAACCATGATGTACCTGCTGCCCGTGGTAGCGCAGGCTATAACATGAACAGAAATTCTCTGAACAGCAATATACCAGCACCTATAAGACCATCTGCAGTGAACCGTTATTCTAGCTCAGCAAGTTTCACAAATTCCCTCTATAATAATACCATGCTTCCATCAACTGGAAATCAAGAATCATTTTCACTGGACAAGTTCAAAAGCCCGGGAAGTTTTGGCTATTCAATTCTTACCAAATCAGTGGGTTTATACACCAATCACGCACAATACTCAGATGCTGCATACTCAAAGGCCAAGGATGAGAGGAAGGATGACTCATTCCTTCAGTCATTTCTGTCAAAGGACTTCTAA	1608	0.4148	MTMGDHNNWGTSELDLHQVGLDVPKFKSAQPPSLPLSPSPISPSSYLAFSSAFSPSEFLNSPLFLTSPNIFASPTTEALVSQSFNWRNSSGEEQQRDKEHEKNYSDFSFQTQIQSSSSMFQMQEPLKKQDIWRFSEPTKQTDFSSERIATKSEYPPIQSFSSEMAAGKAEIQSNSVPESGYFDYTNASQSVREQKRSDDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSMKKKVERSLDGQITEIVYKGQHNHPKPQSRRTNSQSIHQPTSSCTNSGISDQSVVTLGNPQMDHFSIQDSSASVEEEEFEQTSQTTYPGGDEDNLGQDAKRWKGDNENDGYSASGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAQDIKSVITTYEGKHNHDVPAARGSAGYNMNRNSLNSNIPAPIRPSAVNRYSSSASFTNSLYNNTMLPSTGNQESFSLDKFKSPGSFGYSILTKSVGLYTNHAQYSDAAYSKAKDERKDDSFLQSFLSKDF	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g1025	535	MobiDBLite	consensus disorder prediction	306	320	-	-
	Ssu3g1025	535	ProSiteProfiles	WRKY domain profile.	359	424	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu3g1025	535	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	12	533	-	-
	Ssu3g1025	535	MobiDBLite	consensus disorder prediction	256	298	-	-
	Ssu3g1025	535	Gene3D	WRKY domain	351	417	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu3g1025	535	Pfam	WRKY DNA -binding domain	198	254	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu3g1025	535	Pfam	WRKY DNA -binding domain	365	421	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu3g1025	535	MobiDBLite	consensus disorder prediction	187	218	-	-
	Ssu3g1025	535	MobiDBLite	consensus disorder prediction	248	346	-	-
	Ssu3g1025	535	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	12	533	IPR044810	GO:0003700
	Ssu3g1025	535	SMART	WRKY_cls	364	423	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu3g1025	535	SMART	WRKY_cls	197	255	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu3g1025	535	ProSiteProfiles	WRKY domain profile.	192	256	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu3g1025	535	SUPERFAMILY	WRKY DNA-binding domain	193	256	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu3g1025	535	SUPERFAMILY	WRKY DNA-binding domain	356	424	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu3g1025	535	Gene3D	WRKY domain	183	257	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g1025	Ssu-Chr3	24099117	24101544	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g1025	21	531	WRKY Transcription Factor Family	AT2G38470	43.773	1.97e-114	347

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ssu3g1025		WRKY	9e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g1025	K13424		-	gmx:100776837	898.271

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu3g1025	3	24099117	24101544	Ssu3g1025	3	24099117	24101544	ECH
	Ssu3g1025	3	24099117	24101544	Ssu4g2453	4	61550237	61553114	PCT