Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1001 ATGCTCAAGGATCCAACTATGTTGAATTATTTTGGTCAATCAGAGttggttttatttattgaatcaaGCTCCGTCGTGAAACAGTTAttggttttggttttatttagtattagtttGATTCCTAATCACCTCAGTTCTCACGAACTACAATCCAAGGCATCAGTTGGTCAACAAAAGAATTATCTGCTCCGTTATGGAATGGCAGATCTTGCTAGTCATGGGAATCTTGAGCGTGATATTGAGCAAgcACTCATTGCCTTAAAGAAAGGAACTCAATTAATAAAGTACAGTCGAAAAACGAAGCCAAAAGTTTGCCCATTCAGACTCTCTCTGGATGAAACAACACTGATTTGGATTTCTCATAAGAAGGAaaggaatttgaaattatcttcAGTTTCACGCATTATCCCTGGACAAAGAACTGTTGTCTTTAGAAGATATTTGCAACCAGAAAAGGATTACTTATCATTTTCACTTCTTTATAATAACGGGGAGCGAACACTTGATTTGATATGCAAGGACAAAGATGAGGCAGATGTATGGTTTACAGGCCTTAAGACATTAATTTCTACTGGAAAGCATAATAGACGCATTGGAAGTGAATTATTTGATGATGGTGTTGATTTTATTCCAAATGGTCGTCCTTTTGGTGTGCCACTAGAATTTGCTATAAGCATTACTCGTAATAgggtttcttttaattttgcttCTCATGAGTCTTCATTGAATTTGGCAAGCACGAATGTGGGGTTAGAGTGTGCTAATATGCAACCAAGAACAAGTGTTGGAGATGGTTTTCGTGTTAGTGTGTCAAGTACACCTAGTTGTTCAAGTGGAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATATATGGGGAGAGGTCTGGGCAGATGGGGTTTCACTTGATGGATTTGGCACTCAAGCCCATTCCACAACAGATGTGTTGATTCCTAAGCCATTAGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGCGACACATTGCTTTATTAACTAGGCAAGGGGAGGTCTTTACTTGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAGAGATTTTGGTCGCCCTCAActtgttgagtttttggcagtTACTAATATGGATTTTGTTGCTTGTGGAGAGAATCATACATGTGCTGTATCTACATCTGATGATCTTTTCTCATGGGGTGATGGTACATATAATTTTGGACTTCTTGGTCACGGAACTAATGTTAGCCACTGGATACCAAAGAGGGTTAATGGTCCTCTAGAAGGACTTCAAGTTATATCTATTGCATGTGGCACATGGCATTCAGCACTAGCAACTTCTAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTTTTGGGTCATGGAAATAGAGAGAGTGTATCATATCCAAAGGAGGTACAATTATTAAGTGGATTGAAAACTATTAAGGTTGCATGTGGAGTATGGCATACTGCAGCTATTGTAGAGGTTACTTTTCAATCTGGTTCAAATGTTTCATCCAGGAAGCTTTTCACTTGGGGAGATGGTGACAAATATCGTTTGGGACATGGAAACAAGGAAACATACCTTCAACCCACCTGTGTCTCTGCActtattgaatataatttccACCATATAGCTTGCGGACACACTATGACTGTTGCCCTCACTACATCTGGTCATATCTTTACTATGGGAAACATTGAATATGGTCAACTAGGAAATCCTTTAGCTGATGGAAAAGTACCTATCCTAGTACAAGATAAGTTAGTGGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTGCTGCCTTGACATCAAGAAGCGAACTATATACTTGGGGGAGAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAGGATAGAAAATCTCCAACATTGGTGGAATCCTTAAAAGATAGGCATGTAAAGAATATCTCTTGTGGCTCAAACTTTACATCTTGCATATGTATTCATAAATGGGTCTCTGGAGTTGACCAATCTATTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGACATAACTGCTATAATTGTGGATTAGTGCATTGTCATGGTTGTAGTTCAAGAAAGGTATTGAAAGCAGCATTAGCTCCAACACCAGGAAAACCTCATCGTGTGTGTGACTCTTGTTATAATAAGCTTAAAGTTGTCGAGGCAGGTACTGCTTCTAAtcttaatagaaaaattactaCTACACCTCGCAGTTCCATAGATGCTAGGGAAAGATTTGGCCAAGGAGAAATAAGGTCTTCAAGACTTATTTTGCCTCTTATCACAGAACCAATAAAATACCATGAGATGAGGAGTAATAAATTGGGAAACAAATATGATTATTCTTCTATGATTCTAGCTTCCCAAGTTCCATCACTTCTACAATTAAATGATATTGCATTTGGAAATTCAGTAAATTTCAGTCCAAATGTTTTGAAGCCCGCTATAGCTCCTAGTCCACCAGCAACTCCACCTCTCAATTTAAGACCAGCATCTCCTTATGCAAGAAGGCCAAGTCCGCCACGTTCTAGAACTTCAGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAGACAAATGAACTTTTGAATCAAGAAGTTTCAAAATTGCAAAACCAAATCCGAAGTTTGAAGCTAAGAAATGACATAGAAATTCAAAAGCTTCAGCAAAACGTCACAGAAGCTACCTCCTTCGCTGCAGAGGAATCTGTTAAACATAAAGCAATGAAAGAATTTTTTGAGTCCACAGTAGATCAGATGAAGGAAATGATTGAGAAGTTGCCACCAGAAGTTTTAGATAATGAAAATTGGAATACCATGCTTACTCGAGCTGAggattttctaaaagaaaatttagaatttgaaaCACCTTTCGTATCATCAAGTATGATGTCCCAGCAACAAAATGCACCTAATACACTTGACTCAAATAGTAGCTCTTCTAAACTACAAGAACATAGCGtacaagaaaataatgaaaccaTAGGAGTTGACCCATCATCACAAGATGGAGGAAATgttcttaaagaaattaatagctCATCTTTATCAAACAATGAAGCATTAGTGCCTTCtcaaaactttgaaaatgacacaAAATCCGAAGACTCTTCAAGACCAGGCAAACAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTGACACTAATAGTAAAGTCTGGTGGTGTCAAGATTTTCAAACGAGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGCTTAGGAAATATGGTCCACAAACTACAAATTCCGAAGGTATCGGGTCATCTAACACTCTACCACCACCACCTACTGAAGAAAATATTGAGGCAGCGTCTTCCTAA 3459 0.3643 MLKDPTMLNYFGQSELVLFIESSSVVKQLLVLVLFSISLIPNHLSSHELQSKASVGQQKNYLLRYGMADLASHGNLERDIEQALIALKKGTQLIKYSRKTKPKVCPFRLSLDETTLIWISHKKERNLKLSSVSRIIPGQRTVVFRRYLQPEKDYLSFSLLYNNGERTLDLICKDKDEADVWFTGLKTLISTGKHNRRIGSELFDDGVDFIPNGRPFGVPLEFAISITRNRVSFNFASHESSLNLASTNVGLECANMQPRTSVGDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGEVWADGVSLDGFGTQAHSTTDVLIPKPLESSVVLDVQQIASGVRHIALLTRQGEVFTWGEESGGRLGHGIDRDFGRPQLVEFLAVTNMDFVACGENHTCAVSTSDDLFSWGDGTYNFGLLGHGTNVSHWIPKRVNGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHHIACGHTMTVALTTSGHIFTMGNIEYGQLGNPLADGKVPILVQDKLVGEFVEEISCGAHHVAALTSRSELYTWGRGANGRLGHGDIEDRKSPTLVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKVVEAGTASNLNRKITTTPRSSIDARERFGQGEIRSSRLILPLITEPIKYHEMRSNKLGNKYDYSSMILASQVPSLLQLNDIAFGNSVNFSPNVLKPAIAPSPPATPPLNLRPASPYARRPSPPRSRTSGFSRSLIDSLRKTNELLNQEVSKLQNQIRSLKLRNDIEIQKLQQNVTEATSFAAEESVKHKAMKEFFESTVDQMKEMIEKLPPEVLDNENWNTMLTRAEDFLKENLEFETPFVSSSMMSQQQNAPNTLDSNSSSSKLQEHSVQENNETIGVDPSSQDGGNVLKEINSSSLSNNEALVPSQNFENDTKSEDSSRPGKQGETQVIEQFEPGVYVTLIVKSGGVKIFKRVRFSKRRFHEHQAEEWWNKNKDRVLRKYGPQTTNSEGIGSSNTLPPPPTEENIEAASS 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1001 1152 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 79 1130 - -
Ssu3g1001 1152 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 622 673 IPR000408 -
Ssu3g1001 1152 MobiDBLite consensus disorder prediction 840 871 - -
Ssu3g1001 1152 Pfam Regulator of chromosome condensation (RCC1) repeat 455 504 IPR000408 -
Ssu3g1001 1152 Pfam Regulator of chromosome condensation (RCC1) repeat 349 397 IPR000408 -
Ssu3g1001 1152 Pfam Regulator of chromosome condensation (RCC1) repeat 520 566 IPR000408 -
Ssu3g1001 1152 Pfam Regulator of chromosome condensation (RCC1) repeat 402 451 IPR000408 -
Ssu3g1001 1152 Pfam Regulator of chromosome condensation (RCC1) repeat 569 618 IPR000408 -
Ssu3g1001 1152 Pfam Regulator of chromosome condensation (RCC1) repeat 623 670 IPR000408 -
Ssu3g1001 1152 CDD PH_PLC_plant-like 78 190 - -
Ssu3g1001 1152 Gene3D - 516 686 IPR009091 -
Ssu3g1001 1152 Gene3D - 268 515 IPR009091 -
Ssu3g1001 1152 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 456 507 IPR000408 -
Ssu3g1001 1152 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 335 345 IPR000408 -
Ssu3g1001 1152 Pfam FYVE zinc finger 674 739 IPR000306 GO:0046872
Ssu3g1001 1152 SUPERFAMILY RCC1/BLIP-II 290 675 IPR009091 -
Ssu3g1001 1152 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Ssu3g1001 1152 Coils Coil 875 909 - -
Ssu3g1001 1152 ProSiteProfiles BRX domain profile. 1068 1123 IPR013591 -
Ssu3g1001 1152 Pfam Pleckstrin homology domain 81 189 IPR001849 -
Ssu3g1001 1152 SUPERFAMILY PH domain-like 79 189 - -
Ssu3g1001 1152 MobiDBLite consensus disorder prediction 982 1053 - -
Ssu3g1001 1152 PRINTS Chromosome condensation regulator RCC1 signature 332 345 IPR000408 -
Ssu3g1001 1152 PRINTS Chromosome condensation regulator RCC1 signature 401 417 IPR000408 -
Ssu3g1001 1152 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Ssu3g1001 1152 PRINTS Chromosome condensation regulator RCC1 signature 617 638 IPR000408 -
Ssu3g1001 1152 PRINTS Chromosome condensation regulator RCC1 signature 442 458 IPR000408 -
Ssu3g1001 1152 PRINTS Chromosome condensation regulator RCC1 signature 559 577 IPR000408 -
Ssu3g1001 1152 PRINTS Chromosome condensation regulator RCC1 signature 458 472 IPR000408 -
Ssu3g1001 1152 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 290 348 IPR000408 -
Ssu3g1001 1152 Pfam Transcription factor regulating root and shoot growth via Pin3 1068 1122 IPR013591 -
Ssu3g1001 1152 MobiDBLite consensus disorder prediction 1121 1152 - -
Ssu3g1001 1152 SUPERFAMILY FYVE/PHD zinc finger 674 742 IPR011011 -
Ssu3g1001 1152 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 400 IPR000408 -
Ssu3g1001 1152 Gene3D - 78 197 IPR011993 -
Ssu3g1001 1152 MobiDBLite consensus disorder prediction 982 1069 - -
Ssu3g1001 1152 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 79 1130 - -
Ssu3g1001 1152 CDD FYVE_like_SF 684 736 - -
Ssu3g1001 1152 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 494 504 IPR000408 -
Ssu3g1001 1152 SMART fyve_4 672 741 IPR000306 GO:0046872
Ssu3g1001 1152 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 678 740 IPR017455 -
Ssu3g1001 1152 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 401 455 IPR000408 -
Ssu3g1001 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 745 IPR013083 -
Ssu3g1001 1152 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1001 Ssu-Chr3 23576328 23589433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1001 1066 1132 Major Intrinsic Protein MIP AT1G31880 34.328 1.03e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1001 - - gmx:100779684 1813.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1001 3 23576328 23589433 Ssu4g2466 4 61881097 61884734 PCT