Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0998 ATGGCTTCTAGGGAGAGAACAAGAGCGGCTCTGCAACACACGTTGCAACAACTTCGAGATGTCACAAACTCCAGTGCTCTGAACAAAGCGTCAATTATTGTAGATGCCTCAAAATACATAGAGGAGTTGAAACAAAAAGTAGAGGGACTGAACGCAGAGCTGGGAATCGCGGAATCATCAACAGCCTCTCAAATTGATGAACTACCTATGGTAACTGTGAAAACCCTAAAAAAGGGTTTCCTCATTAATGTGCTTTTAGAAAAGAATTGCTCCGGTATGCTCGTCTCTATACTCGAAGCCTTTGAAGAACTGGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGCGAAGACAGTTTCCAGCTAGAAGCTGTGGGAAGAGAAAGTCACAAGAACGACAGTGTTGACGCGCAAGTGGTAAAACAAGCAGTGTTGCGAGCAATCAAGAACGCTGACTAA 456 0.4452 MASRERTRAALQHTLQQLRDVTNSSALNKASIIVDASKYIEELKQKVEGLNAELGIAESSTASQIDELPMVTVKTLKKGFLINVLLEKNCSGMLVSILEAFEELGLDVLDARVSCEDSFQLEAVGRESHKNDSVDAQVVKQAVLRAIKNAD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0998 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 58 IPR036638 GO:0046983
Ssu3g0998 151 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 150 - -
Ssu3g0998 151 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 150 - -
Ssu3g0998 151 Coils Coil 33 60 - -
Ssu3g0998 151 Gene3D - 2 59 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0998 Ssu-Chr3 23468600 23470234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0998 - - gmx:100527466 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0998 3 23468600 23470234 Ssu6g3102 6 70575736 70577236 ECH
Ssu3g0998 3 23468600 23470234 Ssu4g2472 4 62078262 62080018 ECH
Ssu3g0998 3 23468600 23470234 Ssu3g0998 3 23468600 23470234 ECH
Ssu3g0998 3 23468600 23470234 Ssu6g2747 6 63905283 63907253 ECH
Ssu3g0998 3 23468600 23470234 Ssu9g1278 9 46503771 46504963 ECH