Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0996 ATGATGCTTCCAAACATCGTAGTTCGCTTCTTCTTACTCTTTTGCCTTATTGGGATGGTCTCAGCTCAGTTATCCTCTACCTTTTATGCCACAACGTGTCCTAATGCGCTTTCAACCATTAAAGCAGAAGTGGTGTCTGCTGTTAACAACGAGCGTCGCATGGGAGCCTCCCTGCTACGTCTTCATTTCCATGATTGCTTTGTTCAAGGATGTGATGCATCGGTACTATTGGATGATACATCGAGTTTCACAGGTGAGAAGACAGCGGGTCCCAACGCTAATTCGATAAGAGGCTTTGATGTAATAGACACCATAAAGTCTAAAGTGGAGAGCTTATGCCCTGGTGTTGTCTCTTGTGCTGATATCCTCGCGGTAGCAGCAAGAGACTCGGTCGTTGCtCTTGGTGGAGCTAGTTGGACTGTGCAACTGGGTAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCTAACTCGGACTTGCCTGCTCCCACTTCAAGTTTAAGTGGTCTCATCTCTTCTTTCTCCAACAAAGGTTTTACAACTAAAGAACTGGTTGCTCTTTCAGGATCGCACACAATTGGCCAAGCGAGGTGTACAAGCTTCAGAGCAAGGATTTACAACGACACCAACATAGATTCCTCTTTTGCAAAATCATTGCAGGCAAATTGTCCTAGCGCGGGTGGTGACAACAATTTGGCCCCTCTTGACACGACCAGCCCAACCACCTTTGACAATGCTTACTTCAAGAATTTGAAGAGCCAAAAGGGTCTCTTGCACTCAGATCAAGAGCTTTTCAATGGAGGATCCACAGACTCTCAAGTAAATTCTTATAGCAGTGATCCTGCAACTTTCAGAACTGACTTTGCCAATGCAATGATTAAAATGGGGAACCTTAGTCCACTTACCGGGTCTAGCGGCCAGATCAGGACCAACTTATACTTCGAATTTCTCCTAAAATTACATAGAATTCCCTTTACCATCATGGCTACTACTTCTTTCTCCATGACCAAACCAATCTTCAAAATTCGTTTCTTCTTATTCTTATGCTTTATTGGGATAGTCTCATCTCAATTATCCTCCGATTTTTACTCCACAACGTGTCCTAATGTGCTTTCAACCATTAAGACCGCAGTGGATTCTGCTGTGAGCAATGAGGCTCGCATGGGGGCATCACTTCTTCGTCTCCATTTCCATGATTGCTTTGGATGTGACGCATCAGTGCTATTAAATGATACATCAAGTTTCACGGGTGAACAAACGGCATTGCCCAACGTTAATTCCTTAAGGGGTTTTAATGTAATAGACACCATAAAGTCCCAAGTGGAGAGCTTATGCCCCGGTGTTGTCTCTTGCGCTGATATTCTCGCTGTAGCTGCAAGAGACTCTGTTGTCGCTCTTGGTGGACCTAGTTGGACGGTGCAATTGGGCAGAAGAGACTCAACCACAGCAAGTTTAAGTTCTGCAAACTCAGACTTGCCCGCTCCTTTTTTCAATCTAAGTCAACTCGTCAATGCTTTCTCTAACAAAGGTTTCACCACCGAAGAAATGGTTGCTCTGTCAGGATCTCACACAATTGGCCAAGCTAGTTGTTCAACTTTCAGAACAAGGATTTACAACGACACCAACATAGATTCCTCTTTTGCAACATCATTGCAAGCAAATTGTCCTAGCGTCGGTGGTGATAGCAATTTGTCCCCTCTTGACACTACCAGCCCAAACACATTTGACAATGCTTACTTCAAGAATCTGCAGAGCCAAAAGGGTCTCTTGCACTCAGATCAAGAGCTTTTTAATGGAGGATCCACTGACTCTCAAGTAAATGGTTATAGCAGCGATCCTTCAAGTTTCCAAACTGACTTTGCCAATGCAATGGTTAAAATGGGAAACCTCAGTCCACTTACCGGGTCTAGTGGCCAGATCAGGACCAACTGTTGGAAGACCAATTAA 1947 0.4432 MMLPNIVVRFFLLFCLIGMVSAQLSSTFYATTCPNALSTIKAEVVSAVNNERRMGASLLRLHFHDCFVQGCDASVLLDDTSSFTGEKTAGPNANSIRGFDVIDTIKSKVESLCPGVVSCADILAVAARDSVVALGGASWTVQLGRRDSTTASLSSANSDLPAPTSSLSGLISSFSNKGFTTKELVALSGSHTIGQARCTSFRARIYNDTNIDSSFAKSLQANCPSAGGDNNLAPLDTTSPTTFDNAYFKNLKSQKGLLHSDQELFNGGSTDSQVNSYSSDPATFRTDFANAMIKMGNLSPLTGSSGQIRTNLYFEFLLKLHRIPFTIMATTSFSMTKPIFKIRFFLFLCFIGIVSSQLSSDFYSTTCPNVLSTIKTAVDSAVSNEARMGASLLRLHFHDCFGCDASVLLNDTSSFTGEQTALPNVNSLRGFNVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGPSWTVQLGRRDSTTASLSSANSDLPAPFFNLSQLVNAFSNKGFTTEEMVALSGSHTIGQASCSTFRTRIYNDTNIDSSFATSLQANCPSVGGDSNLSPLDTTSPNTFDNAYFKNLQSQKGLLHSDQELFNGGSTDSQVNGYSSDPSSFQTDFANAMVKMGNLSPLTGSSGQIRTNCWKTN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0996 648 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Ssu3g0996 648 ProSitePatterns Peroxidases active site signature. 389 400 IPR019794 GO:0004601
Ssu3g0996 648 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Plant peroxidase signature 290 303 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PANTHER PEROXIDASE 350 648 - -
Ssu3g0996 648 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Ssu3g0996 648 Gene3D Peroxidase, domain 2 161 295 - -
Ssu3g0996 648 Gene3D Peroxidase, domain 2 493 627 - -
Ssu3g0996 648 SUPERFAMILY Heme-dependent peroxidases 357 648 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 SUPERFAMILY Heme-dependent peroxidases 23 312 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PANTHER PEROXIDASE 72-RELATED 16 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PANTHER PEROXIDASE 72-RELATED 350 648 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 Gene3D - 27 311 - -
Ssu3g0996 648 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 ProSiteProfiles Plant heme peroxidase family profile. 23 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 Gene3D - 361 644 - -
Ssu3g0996 648 CDD secretory_peroxidase 357 647 IPR033905 GO:0004601|GO:0042744
Ssu3g0996 648 Pfam Peroxidase 41 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 Pfam Peroxidase 375 611 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 ProSitePatterns Peroxidases proximal heme-ligand signature. 515 525 IPR019793 -
Ssu3g0996 648 ProSiteProfiles Plant heme peroxidase family profile. 357 648 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu3g0996 648 PANTHER PEROXIDASE 16 311 - -
Ssu3g0996 648 CDD secretory_peroxidase 23 311 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0996 Ssu-Chr3 23347677 23365079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0996 353 648 Peroxidase AT5G05340 67.333 2.09e-145 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0996 K00430 - cqi:110690628 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0996 3 23347677 23365079 Ssu4g2479 4 62279069 62282509 PCT