Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0989 ATGGAGCGGAAGGGAAGTGTGCTTATGCAAAGATATGAACTTGGGAGATTATTAGGCCAAGGAACCTTTGCGAAGGTCTACCATGCTAGAAACCTTATAACTGGCATGAGTGTGGCCATTAAAGTAGTTGATAAAGAAAAGATTTTGAAAGTTGGAATGATTGATCAGATTAAGCGTGAAATTTCTATGATGAGATTAATCAGACATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCagtaaaaccaaaatttacttTGTCATGGAGTATGCAAAAGGTGGTGAGCTCTTCAACAAGGTAGTCAAAGGAAGGCTCAAGGTGGATGTTGCTAGGAAATATTTTCAGCAACTGATTGGCGCAGTTGACTACTGCCATAGCAGGGGTGTGTGTCATCGAGATTTAAAACCTGAAAATCTACTATTGGatgaaaatgagaatttgaagGTTTCGGACTTTGGGTTGAGTGCCCTTGCTGAATCTAAGTGCCAAGATGGATTGCTCCACACAACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAAGGGTTATGATGGGATGAAAGCCGATATATGGTCATGTGGGGTAATCTTGTATGTTCTATTGGCTAGTCGTCTTCCTTTCCAGGATACAAATCTGATGGAGATGTACAGGAAAATTGGTAAAGCGGAATTCAAATTTCCTAAATGGTTTGCACCGGTTGTTCGCCGGTTATTGTCCAGAATTTTGGATCCAAACCCAAAGACCAGGATATCAATGGCCAAGATTATGGAAAGTTCTTGGTTTAGAACGGGGTTGGTGAAGCCTGCTATTACTGCGACCAAAAGCGAAGAACTAGCTCCTCTGGATGCTGATGGAGTATTTGAAGCGTGCGAGAATGGTGGTCCTATTGCAGAGTCCAAGCAAGAGCAGGCTAAGCCTTGTAATTTAAATGCTTTTGATATTATCTCCTTCTCGACTGGTTTTGATTTATCTGGTTTTTTTGAGGACACTGTTCTCAAGAAAGAGATGCGGTTTATGTCGAAGAAGCCTGCCTCAATTATAATCTCTAAGTTGGAAGAAATTTGTAAGCGGCTTTGCTTGAAAGTGAGGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTCCAAGGAAGGCAGGAAAGGGACTTTGGGTGTTGATGCTGAGATTTTTGAGATTACTCCACACTTCCATATGGTGGAATTTAGAAAGTCCAATGGGGATACCATGGAGTACCAGAAGCTTTTTAAACAGGATATTAGACCAGCACTTAAGGACATTGTTTGGACCTGGCAAGGAGAACAACCACAGCAACTTCAACATGAAGAAGTCCAGGAAGAGCAACAGCCTTCTCATACTGCATAG 1377 0.4118 MERKGSVLMQRYELGRLLGQGTFAKVYHARNLITGMSVAIKVVDKEKILKVGMIDQIKREISMMRLIRHPHVVELYEVMASKTKIYFVMEYAKGGELFNKVVKGRLKVDVARKYFQQLIGAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALAESKCQDGLLHTTCGTPAYVAPEVINRKGYDGMKADIWSCGVILYVLLASRLPFQDTNLMEMYRKIGKAEFKFPKWFAPVVRRLLSRILDPNPKTRISMAKIMESSWFRTGLVKPAITATKSEELAPLDADGVFEACENGGPIAESKQEQAKPCNLNAFDIISFSTGFDLSGFFEDTVLKKEMRFMSKKPASIIISKLEEICKRLCLKVRKKDGGLFKLEGSKEGRKGTLGVDAEIFEITPHFHMVEFRKSNGDTMEYQKLFKQDIRPALKDIVWTWQGEQPQQLQHEEVQEEQQPSHTA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0989 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Ssu3g0989 458 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0989 458 PANTHER - 2 445 - -
Ssu3g0989 458 Gene3D Transferase(Phosphotransferase) domain 1 4 316 - -
Ssu3g0989 458 Gene3D Kinase associated domain 1, KA1 317 434 - -
Ssu3g0989 458 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Ssu3g0989 458 Pfam NAF domain 311 369 IPR004041 GO:0007165
Ssu3g0989 458 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 445 - -
Ssu3g0989 458 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0989 458 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Ssu3g0989 458 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Ssu3g0989 458 CDD CIPK_C 315 429 - -
Ssu3g0989 458 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0989 458 CDD STKc_SnRK3 11 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0989 Ssu-Chr3 23215301 23216677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0989 1 441 CBL-interacting serine-threonine protein kinases AT5G58380 66.886 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu3g0989 Pkinase 3.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0989 K07198 - gmx:100811923 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0989 3 23215301 23216677 Ssu3g0989 3 23215301 23216677 ECH
Ssu3g0989 3 23215301 23216677 Ssu6g2761 6 64122045 64123442 ECH
Ssu3g0989 3 23215301 23216677 Ssu9g1287 9 46734391 46735779 ECH