Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0980 ATGAGAGAGGCGCAGAACGACACCGTTGCAACAGAGTTAACAAGCGAGGCGCCATCCGGCGTCGTTTTGTTCGGGAAATACGAGCTGCGGAGGCTACTGGGCGTTGGCGCATTCGCGAAGGTGTACCACGCGACGCGCGTGGACACGCGCCAGAGCGTGGCGGTGAAGGCCGTGAGCAAGCACAAGGTCCTCAACGGCGGGTTCGCCGCCAACGTGGAGCGCGAGATCTCCATCATGCGCCGCCTCCGCCACCCCAACATCATCGACCTCTTTGAAGTCCTCGCCACCAAGACCAAAATCTACTTCGTCATGGAGTTCGCCGCCGGCGGCGAGCTCTTCCACGAGGTCGCCGGCAAGGGGCGGCTCTCGGAGGACGCCGCCAGACACTACTTCCGGCAACTCATCTCCGCCGTGAAACACTGCCACGACCGCGGCGTGTTCCACCGCGACctcaagctcgataacctcttGATCGACGAGAACGGAAACTTGAAGGTCTCGGATTTCGGGTTGAGCGCGGTCACGGGTCAGATCCGACCCGATGGGCTGTTACACACTGTTTGTGGGACCCCCACCCACGTGGCACCGGAGATTCTCGCGAGGAGAGGCTACGATGGTGCGAAAGTGGATCTCTGGTCGTGCGGCGTCGTTTTGTTCGCGCTCACCGCGGGGTATTTGCCCTTCAATGATTACAATATTACCGTTTTGTACAGAAAGATTTACCGCGGTCAATTCCGGTTCCCGAAGTGGATGTCGCATGATCTGAGACTCCTCTTATCACGCTTGTTAGACACGAATCCCGAGACGAGGATCACCGTTGATGGGATTTATGAGGACACGTGGTTCAGCGTGGGTGAAAACCGGCCCGACCGGGTTTTAGTCAAAGAGGGTGAGTGCGAGGAGGATCGAACCGGGTTCAAGTCATTGAACGcgtttgatttgatttcattttcgACCGGGTTGGACATGTCCGGTTTGTTTGAGGATCCGAATGGGTCGGATCCGGTGGAGCGGGTTGTTTTGGCAGTGGCGGCGGAGAGGGTTATGGAGAgggtggcggcggcggcggaggaggcGGGGGTGGTGGTGAGGAGGGAGGGGAACGGTGGTGGAGCGAAGTTAGAGGGGCAGGATGGCAATTTGCTTGGTCTCGTTGTGGTTTACCGGTTAACGGATGATCTGGTTGTGGTTGAAGTGGAAAGGAGTGAAAAGGGTGAGGGATGTGGCGCACAGTTTTGGACAGATAAATTGCGGCCTCTATTTCTTGAATTGGCTAGTGAACAGGAAGTGCCGGTCACCCAGTGA 1305 0.5471 MREAQNDTVATELTSEAPSGVVLFGKYELRRLLGVGAFAKVYHATRVDTRQSVAVKAVSKHKVLNGGFAANVEREISIMRRLRHPNIIDLFEVLATKTKIYFVMEFAAGGELFHEVAGKGRLSEDAARHYFRQLISAVKHCHDRGVFHRDLKLDNLLIDENGNLKVSDFGLSAVTGQIRPDGLLHTVCGTPTHVAPEILARRGYDGAKVDLWSCGVVLFALTAGYLPFNDYNITVLYRKIYRGQFRFPKWMSHDLRLLLSRLLDTNPETRITVDGIYEDTWFSVGENRPDRVLVKEGECEEDRTGFKSLNAFDLISFSTGLDMSGLFEDPNGSDPVERVVLAVAAERVMERVAAAAEEAGVVVRREGNGGGAKLEGQDGNLLGLVVVYRLTDDLVVVEVERSEKGEGCGAQFWTDKLRPLFLELASEQEVPVTQ 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0980 434 Pfam Protein kinase domain 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0980 434 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Ssu3g0980 434 Pfam NAF domain 307 364 IPR004041 GO:0007165
Ssu3g0980 434 ProSiteProfiles Protein kinase domain profile. 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0980 434 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 8 432 - -
Ssu3g0980 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Ssu3g0980 434 PANTHER - 8 432 - -
Ssu3g0980 434 SMART serkin_6 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0980 434 Gene3D Phosphorylase Kinase; domain 1 18 106 - -
Ssu3g0980 434 CDD CIPK_C 310 420 - -
Ssu3g0980 434 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Ssu3g0980 434 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Ssu3g0980 434 SUPERFAMILY Protein kinase-like (PK-like) 23 283 IPR011009 -
Ssu3g0980 434 Gene3D Kinase associated domain 1, KA1 304 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0980 Ssu-Chr3 22944398 22945702 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0980 23 418 CBL-interacting serine-threonine protein kinases AT2G30360 56.716 6.56e-158 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu3g0980 Pkinase 1.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0980 - K12761 gmx:100788245 662.529