Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0978 ATGGGTAACTACAGGTTCAAATTATCAGATATGATCCCCAATGCCTGGTTTTACAAACTCAAGGACATGGGAAGAGCAAGAAAGCAAACTCCAACCCAGTCCAGGAAGAAAAAACAACCTTCACCAGCCTCAGCCACACCACCATCAAAACCAAAGCAACCCCACCAATACAATCCGAGAAAGTCTTACTACTTCACAAGGGAGCTTAACCCAAATGATAGAATCTACACCTCACCAAGAAACAACCAAAATGTCAAAGACACCAATTCCCCTGAACCACCCAGAAAATCATCCAAACAAAGACTCAAGGGAAGAACTGCAAGGACTTATTCTCCTAAGCTTGTTGTTGTCACTAGCAACTCCTCATCACTCCATGATAACTCTGAGGAATCAGAGTACCCTGACCCAGAATTCAGAACAGACCGTGTTCTTCCCACTGAATCATTTGATGAAACGGTTCCTTGGTCCAACTCTTGTGCTTGCAGGCTACACTCCAACACCAAGGACATCATCATTGATGTAGACAACAATTCCATAGCCAGAAAAGATGATAAGCTAGAAGGGTACGAATATGATTCCTTCTCAGACCTTGTGCTTCCACCAATTGTGACCAAGCCACCAAAATTCAATAACTTGCTTAGTGATGCCAAGAAGAAAGAAACCAAACCAAGAAGCAAAATGGCTGCACATGAAGAACCGAACCTGCAGGGGTCTCTGAGAGTTAAAATTGTGAAGGAAGACACTGCATCAATAAAGGATCAGAAGAACACACCTAGTAGGAGATTCTCCGTGAGTTCTCCAGGAGTGAGGCTTCGGATGAATTCGCCGCGAATTGCAAGCCGGAGAATTCAGGCACACGGCCGGAGAAGCGTGTCCTCCGCCGCCAGCTCCGGCTCCCGGAGAAGCCTCTCGGATAGCTTTGCAATTGTGAAGTCATCACTGAATCCACAGAGGGATTTCAGAGAATCAATGGTGGAGATGATTGTGCAGAATAACATAAGGACATCGAAGGATTTGGAGGACCTTCTTGCTTGCTACCTTTCTCTTAATTCAGATGAGTATCATGATCTCATTATCAAAGTGTTCAAGCAAATATGGTTTGATTTGACTGATAATTAG 1119 0.4433 MGNYRFKLSDMIPNAWFYKLKDMGRARKQTPTQSRKKKQPSPASATPPSKPKQPHQYNPRKSYYFTRELNPNDRIYTSPRNNQNVKDTNSPEPPRKSSKQRLKGRTARTYSPKLVVVTSNSSSLHDNSEESEYPDPEFRTDRVLPTESFDETVPWSNSCACRLHSNTKDIIIDVDNNSIARKDDKLEGYEYDSFSDLVLPPIVTKPPKFNNLLSDAKKKETKPRSKMAAHEEPNLQGSLRVKIVKEDTASIKDQKNTPSRRFSVSSPGVRLRMNSPRIASRRIQAHGRRSVSSAASSGSRRSLSDSFAIVKSSLNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDN 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0978 372 MobiDBLite consensus disorder prediction 280 299 - -
Ssu3g0978 372 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 308 370 IPR006458 -
Ssu3g0978 372 ProSiteProfiles OVATE domain profile. 309 368 IPR006458 -
Ssu3g0978 372 MobiDBLite consensus disorder prediction 112 127 - -
Ssu3g0978 372 MobiDBLite consensus disorder prediction 55 91 - -
Ssu3g0978 372 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 3 372 - -
Ssu3g0978 372 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Ssu3g0978 372 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 372 IPR038933 GO:0045892
Ssu3g0978 372 Pfam Transcriptional repressor, ovate 313 369 IPR006458 -
Ssu3g0978 372 MobiDBLite consensus disorder prediction 24 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0978 Ssu-Chr3 22887819 22888937 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu3g0978 Ovate 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0978 - - gmx:100817790 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0978 3 22887819 22888937 Ssu3g0978 3 22887819 22888937 ECH