Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0976 ATGGAATCATCTGATACCATCAATACAGCCATGTACAAGGGGAGATTTTGCACAAGTGGTGGAGTTAAGGCTCAGCTTGGTTATGTTGAAACTGATCCATCTGGTCGATATGGTCGTTTCAGGGATATTCTGGGCAAAGGAGCAATGAAAACTGTGTATAGGGCATTTGATGAATTACTAGGGATTGAAGTGGCCTGGAACCAAGTCAAGCTCGGTGATGTCTTTCACTCACCAGAACAAGTTCAGCGCCTGTATTCAGAGGTTCATCTCCTTAAGCACCTCGACCATGAATCTATGATGATCTTCTATGGTTCTTGGATTGATGTCAATAACAGAACCTTCAACTTCATCACTGAATTGTTCACCTCCGGCACACTTAGAGAGTATAGGCAGAAGTATAAGCGAGTAGATATCCGAGCAGTTAAGAATTGGGCTCGCCAGATTCTAAGTGGTTTGGAGTATTTACACAGCCATAATCCTCCTGTAATACATAGAGATCTCAAGTGTGACAACATCTTTGTCAATGGCCATCAGGGGCGGGTCAAGATTGGTGACTTAGGCCTGGCAGCTATACTTCGTAGCTCCCAACATGCCCACAGTGTTATAGGAACACCAGAATTCATGGCACCAGAACTGTACGAAGAGAAATACAACGAGCTGGTAGATATATACTCCTTCGGTATGTGCATGATAGAGCTGCTTACTTTTGAGTTCCCATACAGTGAGTGCATCAACCCAGCTCAAATATACAAGAAAGTTACTTCGGGGAAGCTACCTGATGCGTTTTACAGAATCCAAGACTTGGAAGCCCAGAAGTTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGACCATCAGCTAAGGAGCTGTTGTTGGACCCATTTTTAGCCACAGACCAACTTGAAATACCATTGCCACCAAACATACCATTACCtacaaatcaaattctaaaGCTTAATTCCACTGCACCATTTCCCAGTGAGCGTTGTGATCAAACAAAGAGCGCGGATATGACAATCACTGGGTCAATAAACGAAGAGGACAACACAGTTTTCCTTAAAGTGAGGATATCTGACATAATGGGGCACACGAGACACGTGTTCTTCCCATTTGACACATTAAAAGACACGGCGATTCAGGTGGCGATGGAGATGGTACAAGAACTTGAGATTAGCCACTTGGAACCATTGGAGATTGCTGCAATGATAGATCATGAGGTATCAACTTTAGTTCCAACTTGGAGGGACAAGGTCAAGTGTCACCACCAACGACAGTACAGCTTCAACTacgaagaagaagatgatgttAATAACCATCACCCTTTCTTCTTCTCATCTTCTCCATCATCCCCTCGCGGTTCTGTCCACATGTCTGGTTCCAACTCCTTCAAGACCCATGTTCGTGGGAACCATTACCCGTTTGCTCAAGAATGGCCTCAAGACGATCTGTTTACAAACGACGATGCAAGCTCTGATCAAGCCTCAATGAACTCCTTCAAGTGTTCCACTTTCCAATTCTGCAACGAAGACGAGCATGCCCCACCAGCAGCGGTAGAATCGGCAGAACCCAGTTTCGCCAAACGGTTTTACTACCCGCGAATAGACCCTTCTTGTGGTTGCAGATTTGGGTCAAGCCACGGGTGCCCGAGGCTAACGAGGATTCGCTCGTGCCCGCACGAGCGGAGGAGCCTGCAGCTTCAGCGGTCGATGATGTTGGAGGAGGTTTACAAGTACAAGAGACGCTTGTTAGCCACCGTTGGCGCCGTTGGGAACATCGGGTTTCGGTATCCGGAGAGAGGTGGATGCTAA 1809 0.4555 MESSDTINTAMYKGRFCTSGGVKAQLGYVETDPSGRYGRFRDILGKGAMKTVYRAFDELLGIEVAWNQVKLGDVFHSPEQVQRLYSEVHLLKHLDHESMMIFYGSWIDVNNRTFNFITELFTSGTLREYRQKYKRVDIRAVKNWARQILSGLEYLHSHNPPVIHRDLKCDNIFVNGHQGRVKIGDLGLAAILRSSQHAHSVIGTPEFMAPELYEEKYNELVDIYSFGMCMIELLTFEFPYSECINPAQIYKKVTSGKLPDAFYRIQDLEAQKFVGKCLANVSERPSAKELLLDPFLATDQLEIPLPPNIPLPTNQILKLNSTAPFPSERCDQTKSADMTITGSINEEDNTVFLKVRISDIMGHTRHVFFPFDTLKDTAIQVAMEMVQELEISHLEPLEIAAMIDHEVSTLVPTWRDKVKCHHQRQYSFNYEEEDDVNNHHPFFFSSSPSSPRGSVHMSGSNSFKTHVRGNHYPFAQEWPQDDLFTNDDASSDQASMNSFKCSTFQFCNEDEHAPPAAVESAEPSFAKRFYYPRIDPSCGCRFGSSHGCPRLTRIRSCPHERRSLQLQRSMMLEEVYKYKRRLLATVGAVGNIGFRYPERGGC 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0976 602 SUPERFAMILY Protein kinase-like (PK-like) 40 329 IPR011009 -
Ssu3g0976 602 ProSiteProfiles Protein kinase domain profile. 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0976 602 Pfam Protein kinase domain 42 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0976 602 SMART serkin_6 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0976 602 Gene3D Transferase(Phosphotransferase) domain 1 121 302 - -
Ssu3g0976 602 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Ssu3g0976 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 599 - -
Ssu3g0976 602 CDD STKc_WNK 36 296 - -
Ssu3g0976 602 PANTHER WNK KINASE 3 599 - -
Ssu3g0976 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0976 Ssu-Chr3 22826689 22831608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0976 19 435 MAP Kinase Kinase Kinase AT3G51630 67.376 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu3g0976 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0976 K08867 - gmx:100272206 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0976 3 22826689 22831608 Ssu3g0976 3 22826689 22831608 ECH
Ssu3g0976 3 22826689 22831608 Ssu4g2493 4 62775870 62781179 PCT