Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0971 ATGAGTTTCAGAGAGAGGAAGATAGGAGGAGAAGAGAGGGAATGTGAAGAATCGGTGTTGGGGAGCACTGAATCCAAATCAGTGAGGCAAAACGGGTCTTTGACAACCACACAGCTAACAATTGATGAGAATCTATTGGTTGACCCTAAACTACTCTTTATTGGGTCCAAGATTGGTGAAGGAGCCCATGGGAAAGTTTATGAAGGAAGGTATGGAAATCAAATTGTTGCAATTAAAGTTCTGCATCGTGGTAGCACTTCCGAAGAAAGAGCTGCGCTTGAAAGTCGTTTTGCTCAGGAAGTTAATATGATGTCTCGTGTCCACCATGATAATCTTGTTAAGTTTATTGGAGCATGTAAGGATCCTCTTATGGTAATAGTTACAGAGCTATTACCAGGGATGTCACTGCGTAAATATTTAACGAGTATCCGTCCTAAACTATTAGATCTTCATGTGGCTATAAACTTTGCCATTGATATTGCTCGAGCCATGGATTGGCTCCATGCCAATGGGATCATACACAGAGATCTGAAACCTGACAATCTGTTGCTTACGGCAAATCAGAAGTCTGTTAAACTTGCTGATTTTGGTCTTGCAAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAAACGGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTGACGTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTGTATAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGGATGTCCAACTTACAGGCTGCTTATGCTGCTGCATTCAAgCAAGAGAGGCCCATCATTCCAGATGACATATCCCCTGAACTTGCTTTTGTCATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCAAGCTTTAGTCAGATCATCCGCATGCTCAATGCGTTTCTCTTCACACTCTCACCACCATCTCCTCCTTTGCCAGTACCTAACAATGAACCTGAGGTGGCTACAACAAGTAATGGCACCATTACTGAGTTTTCTGCCCGAAACAGAGGAAAGTTTGGCTTTCTTCGCCAATTGTTTTCTTCAAAGAGGACCAAAAACTAA 1110 0.4279 MSFRERKIGGEERECEESVLGSTESKSVRQNGSLTTTQLTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRYGNQIVAIKVLHRGSTSEERAALESRFAQEVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKLLDLHVAINFAIDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPIIPDDISPELAFVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLPVPNNEPEVATTSNGTITEFSARNRGKFGFLRQLFSSKRTKN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0971 369 Gene3D Transferase(Phosphotransferase) domain 1 134 324 - -
Ssu3g0971 369 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 19 342 - -
Ssu3g0971 369 MobiDBLite consensus disorder prediction 1 32 - -
Ssu3g0971 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Ssu3g0971 369 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g0971 369 ProSiteProfiles Protein kinase domain profile. 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0971 369 SUPERFAMILY Protein kinase-like (PK-like) 50 338 IPR011009 -
Ssu3g0971 369 Gene3D Phosphorylase Kinase; domain 1 40 131 - -
Ssu3g0971 369 SMART serkin_6 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0971 369 PRINTS Tyrosine kinase catalytic domain signature 166 184 IPR001245 GO:0004672|GO:0006468
Ssu3g0971 369 PRINTS Tyrosine kinase catalytic domain signature 240 262 IPR001245 GO:0004672|GO:0006468
Ssu3g0971 369 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Ssu3g0971 369 PRINTS Tyrosine kinase catalytic domain signature 128 141 IPR001245 GO:0004672|GO:0006468
Ssu3g0971 369 PANTHER SERINE-THREONINE PROTEIN KINASE 19 342 - -
Ssu3g0971 369 CDD STKc_MAP3K-like 58 313 - -
Ssu3g0971 369 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
Ssu3g0971 369 Pfam Protein tyrosine and serine/threonine kinase 54 313 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0971 Ssu-Chr3 22733324 22737317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0971 40 369 MAP Kinase Kinase Kinase AT5G01850 74.576 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu3g0971 PK_Tyr_Ser-Thr 1.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0971 - - qsu:111990547 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0971 3 22733324 22737317 Ssu3g0971 3 22733324 22737317 ECH
Ssu3g0971 3 22733324 22737317 Ssu4g2495 4 62971650 62976051 PCT