Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0955 ATGGGGTGTTTCACTGTATTGAAGGGCAAGAAGAAAAAGTCTGATTCGATTGGATATGTAAAACGCGTAAGCCATAATGAGAACGTACCAACAGTACTGCCTGAACCTCAAATTCATACTCGCTCACTCCAGTCTGCTCCTCCTAGTTTTAGGACCAGAGTGAAACCCATTCAACCCATTAATAAAGTCAGTAACAATAGAACACGAACTTTATCTGCTCCATCAACTCTTGATGCAGCAGAACAAGATGCTTTAGCCTCAATTGAGTATGAGGAACAAGAAGAGTCAAAACACCGAGCTGGATCAATGAAGGAGCAGCGTTCATCTAGTCCACAACCTTTACCACTTCCATCCCCTCAGGGAGGTGTTGCGTTGAAGGCTGTGGGCAGCTTTAAGTCAGTGACATCTAGTGGTCCTCTATATGCTTCTGGACCTTTGCCGCTCCCACCTAGTGGGTCACTTCGGAATTTTCTGTACGATGAAATTGCTGCTGCTTGCCACAATTTCTCTTCTGATAGATGCATGTCAGAATGTCTTTCGTCCACCATATATAAGGCTTCCTTTGGTGATGATGTTTCAAGTTTGAAGAAGTTTGAAGCCACTGTCACACGGCTTCACCCGTCATCTCAGGGCTTGAAGGAATTCACAAATGAAGTTAATATTCTTGCATCTTTGCAACATCCAAACCTCTGTAAATTGCTAGGATTTCATGCACGAGAGGGTTCAGAACATAGAATGTTGGTTTATGAGAGGCTATACCATGGAAGCTTGGATCGCTTATTGTATGGGAGATCTGATGGGCCATCAAttgattggaatacaagaatgAAAATTGCTATATGTGCTGCACAAGGTCTAACTTTCTTGCATGAAGAAGGGCCTTTTCAGGCAATGTATAATGAATTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAACTTTCAGGATATGGTTGTGTTGGACATATTCCCGAGGAAGAGATTTCAAGCAGTTCATCTGCTGTTGGAAACCTATCAATGGAGACACTGGAGAAAGGAATGCTCACTCCAAAGAGTAATGTATGGAGTTTTGGCATTTTTCTTCTGGAGCTACTTACAGGAAGAAAGAATCTTGATAGCCGTCACCCCAAGGAAGAGAGGAATTTAGTCAAGTGGAGCCGGCCTTTCCTAGCGGACAACTATCGTCTGCCATTGATCATGGATCCTCATCTCAAAGGTCGTTTTCCTTCTAAAGCAGCAAGAACAATAGCTGACATTGCACAAAGATGCCTTCAAAAGGAGCCATCAGACAGACCTACCATGAGAACTGTGGTTGAGAATCTCAAGATGATACAGGATTTGAAATACTCGTGCCGGTTCCCACTGCAAGAGCCATCATCAAACTCTGGAAAACAAATGTCAAGATCACCAAGTCTCAATGGCATCATCTGCCCTGCACCAAGGTTGAGTTtctcaccatcaccaccatcagGAGCCCCAGTACCTGTTTCATCTCCAAGATGGTCTGGAGTGCAGATCCTCCTTCCGCCACGTGCTTGTTCCTCCAGCCTCTCTTTGGAGGAGCTTGATAGGCAGGAAAGCCGCAAGTCATCATCCTCAGCCTCGAGAAGGGCTAGTGTTGAAGGATTTTGA 1641 0.4327 MGCFTVLKGKKKKSDSIGYVKRVSHNENVPTVLPEPQIHTRSLQSAPPSFRTRVKPIQPINKVSNNRTRTLSAPSTLDAAEQDALASIEYEEQEESKHRAGSMKEQRSSSPQPLPLPSPQGGVALKAVGSFKSVTSSGPLYASGPLPLPPSGSLRNFLYDEIAAACHNFSSDRCMSECLSSTIYKASFGDDVSSLKKFEATVTRLHPSSQGLKEFTNEVNILASLQHPNLCKLLGFHAREGSEHRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAICAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADNYRLPLIMDPHLKGRFPSKAARTIADIAQRCLQKEPSDRPTMRTVVENLKMIQDLKYSCRFPLQEPSSNSGKQMSRSPSLNGIICPAPRLSFSPSPPSGAPVPVSSPRWSGVQILLPPRACSSSLSLEELDRQESRKSSSSASRRASVEGF 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0955 546 Pfam Protein tyrosine and serine/threonine kinase 202 444 IPR001245 GO:0004672|GO:0006468
Ssu3g0955 546 Gene3D Phosphorylase Kinase; domain 1 150 250 - -
Ssu3g0955 546 PANTHER OS01G0822200 PROTEIN 44 545 - -
Ssu3g0955 546 MobiDBLite consensus disorder prediction 90 122 - -
Ssu3g0955 546 PANTHER OS01G0588500 PROTEIN-RELATED 44 545 - -
Ssu3g0955 546 MobiDBLite consensus disorder prediction 30 51 - -
Ssu3g0955 546 Gene3D Transferase(Phosphotransferase) domain 1 252 456 - -
Ssu3g0955 546 SUPERFAMILY Protein kinase-like (PK-like) 146 446 IPR011009 -
Ssu3g0955 546 MobiDBLite consensus disorder prediction 520 546 - -
Ssu3g0955 546 MobiDBLite consensus disorder prediction 28 78 - -
Ssu3g0955 546 MobiDBLite consensus disorder prediction 90 104 - -
Ssu3g0955 546 ProSiteProfiles Protein kinase domain profile. 169 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0955 546 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0955 Ssu-Chr3 22544937 22547874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0955 148 448 Receptor kinase-like Gene Family AT4G02010 36.808 1.04e-56 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Ssu3g0955 PK_Tyr_Ser-Thr 1.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0955 - - gmx:100808712 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0955 3 22544937 22547874 Ssu3g0955 3 22544937 22547874 ECH
Ssu3g0955 3 22544937 22547874 Ssu4g2503 4 63151620 63155444 PCT