Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0950 ATGTTAGTGTTTTCTGTGGACCCTGGTTTAAATGATGATGTGTTGGGGTTGATTGTGTTCAAGGCTGGTTTGGAGGACCCCAAAAGGAAACTCTCTTCTTGGAATGAGGATGATAACAGTCCTTGCAACTGGGAAGGTGTGAAGTGTGATCCTTCATCCAATAGGGTCACTGCTCTTGTCCTCGATGGGTTCTCTCTTTCTGGGCATGTTGATAGGGGCTTATTGAGGTTGCAGTTTCTTCAAATTCTCTCACTTTCAAGGAACAACTTCACGGGGCCTATAATCCCTGATCTTCCTCGCCTTGGGAGTTTGCAGGTTGTGGACTTGAGTGACAACAGCCTCTCTGGGGAGATCCCAGAAGGGTTTTTCCAACAATGTGGCTCTCTCAGGACTGTTTCCTTTGCCAAGAACAACCTCACAGGTAAGATTCCTGAGTCCTTGAGCTCATGCTCCAATTTGGCAACTGTTAACTTCTCCTCTAACCAGCTCCATGGGGAATTGCCTAATGGAGTGTGGTTCTTGAGGGGGCTACAGTCACTTGATCTGTCAGATAACTTGCTTGAGGGAGAGATTCCTGAGGGGATTCAGAATCTGTATGATATGAGAGAGTTGAGTCTTCAGAGGAACAGGTTTAGTGGAAGGCTTCCTGGGGATATTGGAGGTTGCATACTTCTGAAATCACTTGATTTGAGTGGTAATTTTCTCTCTGGGGAGCTGCCTCAGTCAATGCAAAGACTCACTTCATGCACATCACTTAGTTTGCAGGGAAATTCAATCTCAGGAGGCATTCCTGACTGGATTGGGGAGTTGAAGAATCTAGCAGTGTTGGATCTTTCTGCTAATGGATTCTCTGGTTGGATTCCTAAGTCATTGGGAAATCTGGACTCTTTGCATAGTTTGAATTTGTCCAGGAATCAGTTAACAGGAAACTTGCCTGATTCTATGGTGAACTGCACTAAGCTTTTGGCTCTTGACATCAGCCACAATCAGTTGGCTGGCCATGTTCCTTCATGGATTTTTAGGATGGGTGTGCAAAGTGTCTCTCTTTCTGGGAATGGCTTTGGCAAGGGTAATTATCCTTCACTTAAGTCCACACCTGCATCTTATCATGGTCTTGTGGTTTTAGATTTGTCATCCAATGCATTTTCTGGTGACCTTCCATCTGGCATTGGGGGACTTAGTAGCCTGCAAGTCCTGAATATTTCCACCAACAATATCTCTGGTTCTATTCCTGTGGGTATAGGAGAGCTTAAGTCTTTGTACATTGTTGACCTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGGGCAATTTCACTCAGTGAACTAAGGCTGCAAAAGAACTTCCTAGGTGGGAGAATTCCAGCCCAAATTTACAAGTGTTCATCTCTAACATTTTTGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAGCCATTGCAAACCTCACCAATCTTCAGTATGTAGATTTGTCATGGAATGATCTCTCTGGAAGTTTACCTAAGGAGTTGACAAATCTGTCCCATCTTTTCTCATTTAATGTATCCTACAACCACCTTGAAGGTGAACTACCTGTGGGAGGCTTCTTCAACACCATCTCCTCCTCATCTGTCTCCGGTAACCCATTGTTGTGTGGTTCCGTTGTCAACCACTCCTGTCCATCCGTTCACCCCAAACCTATAGTCTTAAACCCCAATTCTTCTGGTTCCAACTCCAGCATTTCCTCGCAGAACCATCGTCATAAGATCATTCTAAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTGGTGGCTGTTACTGTCCTAAATATCCACGTGCGTTCCTCAATGGCACATACGGCTGCTCCTTTTGCATTTTCTGGTGGTGAGGACTACAGTGGTTCGCCGGCAAATGATCCAAACTATGGCAAGCTTGTCATGTTTGCTGGTGATGCAGACTTTGCTGATGGAGCCCATAATCTTCTTAATAAAGAAAGTGAAATAGGCCGTGGTGGATTTGGAGTTGTTTATCGCACTTTCCTTCGTGACGGGCATGCTGTTGCAATCAAGAAGCTCACAGTCTCCAGTTTGATCAAGTCCCAAGAGGACTTTGAGAGAGAAGTAAAAAAGCTTGGGAAGATCAGGCACCCTAATCTTGTGGCACTTGAAGGTTATTATTGGACTTCATCCTTGCAGCTCCTTATTTATGAGTACCTATCCGGTGGGAGTTTGCATAAAATTCTACATGATGATAATAGCAAAACTGTCTTCTCATGGCGACAAAGGTTCAAGATCATTCTTGGCATGGCAAAAGGGTTGGCCCATTTGCGCAAAATGAACATAGTTCACTACAATCTCAAATCAACCAATGTGCTGATTGATTGTTCTGGTGAGCCCAAGGTAGGAGATTTTGGCTTGGTGAAACTATTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTCGGATACATGGCGCCCGAGTTTGCTTGCCGCACGGTTAAGATAACCGAGAAATGCGACGTATATGGTTTTGGGATCCTGGTGCTGGAGGTGGTGACAGGAAGAAGACCTGTGGAATACATGGAGGATGATGTGGTGGTTCTTTGTGACATGGTGAGGGGTGCATTGGAAGAAGGCAAGGTGGAGCAATGTGTTGATGGGAGGCTCCTTGGTAATTTTGCTGCTGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGATTTGTGCATCACAAGTGCCATCAAACCGTCCAGACATGGCTGAGGTAGTCAACATATTAGAGTTAATCCAATGCCCTTCAGAAGGACAAGAGGAATTAGAATGA 2856 0.4457 MLVFSVDPGLNDDVLGLIVFKAGLEDPKRKLSSWNEDDNSPCNWEGVKCDPSSNRVTALVLDGFSLSGHVDRGLLRLQFLQILSLSRNNFTGPIIPDLPRLGSLQVVDLSDNSLSGEIPEGFFQQCGSLRTVSFAKNNLTGKIPESLSSCSNLATVNFSSNQLHGELPNGVWFLRGLQSLDLSDNLLEGEIPEGIQNLYDMRELSLQRNRFSGRLPGDIGGCILLKSLDLSGNFLSGELPQSMQRLTSCTSLSLQGNSISGGIPDWIGELKNLAVLDLSANGFSGWIPKSLGNLDSLHSLNLSRNQLTGNLPDSMVNCTKLLALDISHNQLAGHVPSWIFRMGVQSVSLSGNGFGKGNYPSLKSTPASYHGLVVLDLSSNAFSGDLPSGIGGLSSLQVLNISTNNISGSIPVGIGELKSLYIVDLSDNKLNGSIPSEIEGAISLSELRLQKNFLGGRIPAQIYKCSSLTFLILSHNKLTGSIPAAIANLTNLQYVDLSWNDLSGSLPKELTNLSHLFSFNVSYNHLEGELPVGGFFNTISSSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSGSNSSISSQNHRHKIILSISALIAIGAAAFIAIGVVAVTVLNIHVRSSMAHTAAPFAFSGGEDYSGSPANDPNYGKLVMFAGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFEREVKKLGKIRHPNLVALEGYYWTSSLQLLIYEYLSGGSLHKILHDDNSKTVFSWRQRFKIILGMAKGLAHLRKMNIVHYNLKSTNVLIDCSGEPKVGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGRRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVVNILELIQCPSEGQEELE 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0950 951 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 942 - -
Ssu3g0950 951 SMART LRR_typ_2 513 537 IPR003591 -
Ssu3g0950 951 SMART LRR_typ_2 198 222 IPR003591 -
Ssu3g0950 951 SMART LRR_typ_2 294 318 IPR003591 -
Ssu3g0950 951 SMART LRR_typ_2 174 197 IPR003591 -
Ssu3g0950 951 SMART LRR_typ_2 270 293 IPR003591 -
Ssu3g0950 951 SMART LRR_typ_2 101 125 IPR003591 -
Ssu3g0950 951 SMART LRR_typ_2 489 512 IPR003591 -
Ssu3g0950 951 SMART LRR_typ_2 393 417 IPR003591 -
Ssu3g0950 951 ProSitePatterns Protein kinases ATP-binding region signature. 674 697 IPR017441 GO:0005524
Ssu3g0950 951 Gene3D Ribonuclease Inhibitor 229 292 IPR032675 -
Ssu3g0950 951 SMART LRR_sd22_2 417 440 - -
Ssu3g0950 951 SMART LRR_sd22_2 174 197 - -
Ssu3g0950 951 SMART LRR_sd22_2 270 296 - -
Ssu3g0950 951 SMART LRR_sd22_2 489 515 - -
Ssu3g0950 951 SUPERFAMILY L domain-like 29 354 - -
Ssu3g0950 951 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 942 - -
Ssu3g0950 951 SUPERFAMILY Protein kinase-like (PK-like) 669 941 IPR011009 -
Ssu3g0950 951 Pfam Leucine Rich Repeat 177 198 IPR001611 GO:0005515
Ssu3g0950 951 Pfam Leucine Rich Repeat 225 245 IPR001611 GO:0005515
Ssu3g0950 951 Pfam Protein kinase domain 669 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0950 951 SUPERFAMILY L domain-like 246 564 - -
Ssu3g0950 951 CDD STKc_IRAK 674 940 - -
Ssu3g0950 951 Pfam Leucine rich repeat 371 430 IPR001611 GO:0005515
Ssu3g0950 951 Pfam Leucine rich repeat 443 502 IPR001611 GO:0005515
Ssu3g0950 951 Pfam Leucine rich repeat 272 331 IPR001611 GO:0005515
Ssu3g0950 951 Gene3D Ribonuclease Inhibitor 293 565 IPR032675 -
Ssu3g0950 951 ProSiteProfiles Protein kinase domain profile. 668 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0950 951 Gene3D Transferase(Phosphotransferase) domain 1 745 949 - -
Ssu3g0950 951 Gene3D Phosphorylase Kinase; domain 1 660 744 - -
Ssu3g0950 951 Pfam Leucine rich repeat N-terminal domain 11 50 IPR013210 -
Ssu3g0950 951 Gene3D Ribonuclease Inhibitor 10 228 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0950 Ssu-Chr3 22498422 22501490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0950 6 948 Receptor kinase-like Gene Family AT5G01890 63.053 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Ssu3g0950 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0950 - - gmx:100790365 1742.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0950 3 22498422 22501490 Ssu3g0950 3 22498422 22501490 ECH
Ssu3g0950 3 22498422 22501490 Ssu4g2520 4 63545118 63548223 PCT