Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0945 ATGGACAGTCCTGGTTCTAGTCGTAGGAAGGCAATTGAGGAGCTTGTGAGAGGGCATGGTTGTGCCAAACGACTTAGAAGTGTAATCAATGGGATTTGTGAAGATGGGTCATCAACCCCATTTGCTGAGCAACTTCTGAAGGAGGTGCTCATGTCCTTCACCAACTCCCTCTTGATCTTGAACAACCCCACTTCTAAACCCCATGATCATGTCTCTGATGTTCAAGTTTGGGACTCTTCCAAGTCTGAGGACTCTCAAGAGAGTAATTGCAAGAGTTCCGCAGCTAAGGAACGAAGAGGGTGTTACAAGAGAagAAGAAATGAACAAACATGGGAGAAAGAGTCTGAAGCCCCAATCGATGATGGCCATCAGTGGAGAAAGTATGGCCAAAAAGAGATCCTGAATGCCAAATATCCAAGGAACTACTACAGGTGCACGCACAAATTTGACCAGAGTTGCCAAGCAACAAAACAGGTGCAAAGAGTTCAAGAGGATCCAATCCTTTACAAGACTACCTACTATGGTCACCACACTTGCAAGAGCTTGGTAAACCCTGAGATCATACTTGACCCCATTTCCCCTTCAGCCTCTTCCAAGTTCTTTAGCTTTGACAACTCCTTCCCAGCCCCATCCAAACAAGAGTGCCCCTTTCTCTCATCTTCTCTCCCACCAGTGAAAAGGGAGTGCAAGGAGGAGGTCCCTCCCTCAACTTCCTCCAATGATTACCTCATCTCTTCTGAGCTCACTTTCGATAGCTCACCAAGGCATGTCACTCTATCATCAACACTTGACTCGGAGTACAAGGGTGTGGACCTTTCGGATGTCTTGTATGATCCTGCTCAGCTTGATGATGTCTTTGGAACCTTCCTTGAATTTAGATGA 882 0.4626 MDSPGSSRRKAIEELVRGHGCAKRLRSVINGICEDGSSTPFAEQLLKEVLMSFTNSLLILNNPTSKPHDHVSDVQVWDSSKSEDSQESNCKSSAAKERRGCYKRRRNEQTWEKESEAPIDDGHQWRKYGQKEILNAKYPRNYYRCTHKFDQSCQATKQVQRVQEDPILYKTTYYGHHTCKSLVNPEIILDPISPSASSKFFSFDNSFPAPSKQECPFLSSSLPPVKRECKEEVPPSTSSNDYLISSELTFDSSPRHVTLSSTLDSEYKGVDLSDVLYDPAQLDDVFGTFLEFR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0945 293 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 261 - -
Ssu3g0945 293 ProSiteProfiles WRKY domain profile. 114 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0945 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 261 IPR044810 GO:0003700
Ssu3g0945 293 SMART WRKY_cls 119 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0945 293 MobiDBLite consensus disorder prediction 90 115 - -
Ssu3g0945 293 Gene3D WRKY domain 98 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0945 293 SUPERFAMILY WRKY DNA-binding domain 117 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0945 293 MobiDBLite consensus disorder prediction 61 115 - -
Ssu3g0945 293 Pfam WRKY DNA -binding domain 120 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0945 Ssu-Chr3 22423649 22425256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0945 1 256 WRKY Transcription Factor Family AT3G56400 34.686 2.29e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g0945 WRKY 2.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0945 - - gmx:100170682 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0945 3 22423649 22425256 Ssu3g0945 3 22423649 22425256 ECH
Ssu3g0945 3 22423649 22425256 Ssu2g0912 2 46012478 46013822 PCT