Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0944 ATGGAGCCGCGTGACGCCGCGCCCTTCGAGATATCCGGAGCTTCGTCTCAGGAGAGGGCGAGTAACAGCAAATCCCAGAGGGTTAGGCACAAGAGTGTGCAGCATGATGATGATGCCTTACACGAGGACAGTGCGAGGTTGATCTATGTCAATGATCCGAGGAGGACGAACGACAAGTACGAGTTCACGGGAAATGAGATCCGGACTAGCAAGTACACGTTTGTTACGTTCCTGCCCAAGAATTTGTTCATTCAGTTCCACAGGGTTGCCTATCTGTATTTCCTCGCCATTGCGGCTCTCAACCAGCTTCCTCCGCTGGCGGTGTTTGGGAGGACGGTGTCCCTTTTCCCGCTCTTGTTCGTGCTGTGTGTCACGGCTATTAAGGATGGGTATGAGGACTGGCGGAGGCACCGGTCGGATCGCAATGAGAACAACAGAGAGTCTCTGGTGCTTCAGTCTGGCGATTTCCGGTCgaggaaatggaagaaaatacaCGCCGGTGAGGTTGTTAAGATCTTTGCCGATGAGACAATCCCGGCTGACGTGGTGCTGTTGGGGACGAGCGATCAAAGCGGGCTTGCCTACATTCAGACAATGAATTTGGATGGAGAGTCGAATTTGAAGACGAGGTATGCTAGGCAGGAAACAGCCTCGGTGGTTTCTTCGGAGGCGTGTGATGTTTTCGGGGTGATTAGATGCGAGCAACCGAACCGGAATATTTATGAGTTCACGGCCAACATGGAGTTCAATGGACTGAAGTTTTCCCTTAGCCAGTCAAACATTGTTCTGCGAGGCTGCCAACTGAAGAACACGGATTGGATTATTGGTGTTGTTGTTTATGCAGGACAGGAAACAAAAGCAATGCAGAACAGCGCAGCTTCTCCTTCCAAGAGAAGCAAACTGGAAAGTTACATGAACAGAGAGACCCTTTGGttgtcaatttttcttttcatcatgTGCTTGGTTGTGGCTCTTGGGATGGGTCTTTGGCTGGTACGCCACGAGAACCAGCTTGATTCCTTGCCTTACTACAGAAAAAGATACTTCACCAATGGGCCAGATAATGGGAAGAAATATAAGTATTATGGGATACCAATGGAagcatttttctcctttttgagTTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACAGGGATATGTATGATGCCAGCTCTGGGTCAAGGTTTCAGTGTagatcattaaatataaatgaagatTTGGGGCAAATACGCTATGTATTTTCTGACAAGACAGGAACACTAacagaaaacaaaatggaattCCGAAGGGCTAGTGTACACGGGAAGAATTACGGGAGCTCCTTGCTTATGGTTGATAATACAGCAGCAGCAGATGTTACTCCTAAACGGAGATGGAAGCTCAAATCTGAAATTGCAGTTGATTCTGAACTGATGACAATGTTGCGGAAAGACtcaaatagagaagaaagagtTGCTGCTCATGAGTTTTTTCTTACATTGGCTGCTTGTAACACTGTAATCCCTATACTTGGCGATGATGGAATTTCTAGTTGTGGAACTAATGAATTAAATGAAGATATTAGATACATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCAGCTTCTGCATATGGATATACTCTTTTTGAGCGAACATCTGGACATATTGTTATTGACGTCAACGGTGAGAAACTCAGATTGGACGTATTGGGCCTACATGAGTTTGATAGTGTGCGAAAGAGAATGTCTGTTGTTATTCGGTTTCCTGACAATGCGGTAAAGGTGTTAGTCAAAGGTGCTGATACTTCAATGTTTAGCATTTTGGAAAATGGCAATGAGAGCAACAATAACATATGGCATGCAACTCAGAGCCATTTGAGTGAGTATTCTTCACAAGGTTTGCGCACTCTTGTAGTTGGCTCCAGGGATCTTTCTGATGCTGAACTTGAGGAGTGGCAAAGCAGGTATGAAGAGGCAAGTACTTCGTTGACTGACAGAGCTACTAAACTGCGTCAAACAGCAGCTCTTATAGAAAGCAATTTAAAGTTACTTGGAGCAACTGGAATTGAGGACAAGCTACAAGAGGGTGTACCAGAAGCCATTGAGGCTCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACGGCAATTTCAATTGGTCTTTCCTGCAAACTTCTTAGTGGAGATATGCAGCAGATTATTATAAATGGCACTTCAGAGGTCGAATGTAGAAATCTTTTAGCTGATGCTAAAGCCAAATATGGTGTGAAATCTTCAAGTGGAGGGCGTCGAAATCTGAATCGCAAAACCAATGTCGGGCATGGTGATCTTGATATTCCCAATGGTTCAAAGTCATTGAGCTTTCCCAAATGGAATCCTGGAAAGGAAGAAGGAACTAATGCTCCATTGGCACTCATAATTGATGGAAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGCTGTGTTGTCGTGTTGCACCCTTGCAAAAGGCAGGAATTGTTGATCTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGATGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGGACAGTTTCAGTTCTTGAAGAAATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTCGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTATTGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCGTTGACAGATTGGAGTAGTGTTTTCTATTCTGTGATATACACATCTATACCTACTATTATTGTTGGTATTCAGGACAAGGACTTGAGTCACAGGACACTCTTGCAGTATCCAAAACTGTATGGTGCAGGTCACAGGCAGGAAGCTTACAATATGCAATTATTTTGGATCACAATGATTGACACAGTATGGCAGAGCCTTGTTCTCTTCTACATTCCATTGTTCACCTATAAGGACAGTTCAATTGATATATGGAGCATGGGCAGTTTGTGGACGATTGCAGTTGTTATCCTTGTAAATGTACACCTGGCTATGGACATCAACCGTTGGGTATTAATTACTCATGTTGCTGTCTGGGGATCTTTAATCATTACATATGGTTGCATGGTGGTATTGGATTCTATACCTGTCTTTCCTAATTACTGGACTATTTATCATCTGGCAAGGTCCCCTACATATTGGATGACAATTTTGCTTATAATTATTGTGGCATTGCTCCCTCGCTTTATTTGCAAAGTTGTTTATCAGATCTTTTGGCCTTCGGATATCCAGATAGCTAGAGAAGCTGAGTTAATGAGAACACGTCCGGATAATTTGCAGCCGAGGCAACAAGATTCCAGTTAA 3549 0.4258 MEPRDAAPFEISGASSQERASNSKSQRVRHKSVQHDDDALHEDSARLIYVNDPRRTNDKYEFTGNEIRTSKYTFVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQSGDFRSRKWKKIHAGEVVKIFADETIPADVVLLGTSDQSGLAYIQTMNLDGESNLKTRYARQETASVVSSEACDVFGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMQNSAASPSKRSKLESYMNRETLWLSIFLFIMCLVVALGMGLWLVRHENQLDSLPYYRKRYFTNGPDNGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDASSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGKNYGSSLLMVDNTAAADVTPKRRWKLKSEIAVDSELMTMLRKDSNREERVAAHEFFLTLAACNTVIPILGDDGISSCGTNELNEDIRYIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNAVKVLVKGADTSMFSILENGNESNNNIWHATQSHLSEYSSQGLRTLVVGSRDLSDAELEEWQSRYEEASTSLTDRATKLRQTAALIESNLKLLGATGIEDKLQEGVPEAIEALRQAGIKVWVLTGDKQETAISIGLSCKLLSGDMQQIIINGTSEVECRNLLADAKAKYGVKSSSGGRRNLNRKTNVGHGDLDIPNGSKSLSFPKWNPGKEEGTNAPLALIIDGNSLVYILEKELESELFDLATSCRVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIIVGIQDKDLSHRTLLQYPKLYGAGHRQEAYNMQLFWITMIDTVWQSLVLFYIPLFTYKDSSIDIWSMGSLWTIAVVILVNVHLAMDINRWVLITHVAVWGSLIITYGCMVVLDSIPVFPNYWTIYHLARSPTYWMTILLIIIVALLPRFICKVVYQIFWPSDIQIAREAELMRTRPDNLQPRQQDSS 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0944 1182 Pfam Phospholipid-translocating ATPase N-terminal 48 113 IPR032631 -
Ssu3g0944 1182 Gene3D - 700 928 IPR023214 -
Ssu3g0944 1182 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 441 717 IPR023299 GO:0000166
Ssu3g0944 1182 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 62 1163 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu3g0944 1182 SFLD p-type atpase 419 939 IPR044492 -
Ssu3g0944 1182 Gene3D - 121 293 - -
Ssu3g0944 1182 MobiDBLite consensus disorder prediction 1 38 - -
Ssu3g0944 1182 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Ssu3g0944 1182 SFLD C1.7: P-type atpase like 419 939 - -
Ssu3g0944 1182 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 43 1180 - -
Ssu3g0944 1182 CDD P-type_ATPase_APLT_Dnf-like 64 1048 - -
Ssu3g0944 1182 SUPERFAMILY HAD-like 422 932 IPR036412 -
Ssu3g0944 1182 Pfam E1-E2 ATPase 146 393 - -
Ssu3g0944 1182 Pfam Phospholipid-translocating P-type ATPase C-terminal 916 1156 IPR032630 -
Ssu3g0944 1182 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 43 1180 - -
Ssu3g0944 1182 MobiDBLite consensus disorder prediction 23 38 - -
Ssu3g0944 1182 Gene3D - 547 683 IPR023299 GO:0000166
Ssu3g0944 1182 SUPERFAMILY Calcium ATPase, transduction domain A 145 290 IPR008250 -
Ssu3g0944 1182 SUPERFAMILY Calcium ATPase, transmembrane domain M 62 1155 IPR023298 -
Ssu3g0944 1182 Pfam Cation transport ATPase (P-type) 550 625 - -
Ssu3g0944 1182 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 858 974 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu3g0944 1182 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 694 752 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu3g0944 1182 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 368 459 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0944 Ssu-Chr3 22400512 22406200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0944 1 1169 Primary Pumps ATPases AT5G04930 55.379 0.0 1332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0944 K14802 - gmx:100812459 2221.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0944 3 22400512 22406200 Ssu3g0944 3 22400512 22406200 ECH
Ssu3g0944 3 22400512 22406200 Ssu2g0913 2 46036334 46041402 PCT