Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0939 ATGGTTTCCTCTCAGTTTTCTGGTTTGACTATGGCTGCCAGATACAAACCATCGCAAACTCAGTTACTCTTTCCTGCAAACCTTCCTGATACTGCAAACACGGAGCATATTGAGCTAGATTTCTCTGATGTCTTTGGTCCAGTTACGATAGATTTGAATAACATTGATTCCACTACTGCTGAGCCTGTAGAAGAAGTGAGCGAGCTGGTGTATGATGACCCACCAGTCATTTACACCCGCTCACATTCTCTGGTTGGCCCTTCTACTTGTGTTTGTCAATCACTAAAGCTTGGCAAACTCACCATACACGAGACTGAGGATTCATTGGAACTAGTGGAGCATGTCGCTGGAGAGACTATTGAAGACATCAAAGAATCTTCCTTTGTTGAGGAATCTTTGAAAGATGAAGATGGGAATCTCATGAAAGTCCAGAGAGTTAGCATTGAAGATTTTGAGATTTTGAAGGTTGTGGGGCAGGGTGCATTTGCAAAAGTATATCAGGTGAGGAAAAAGGGTACTTCAGAAATATATGCTATGAAGGTCATGCGGAAGGACAAGATTATAGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGGATATTTGGACAAAGATAGAACACCCTTTTGTTGTTCAACTCAGATACTCTTTTCAGACAAAGTACAGATTGTATCTTGTGCTGGATTTTGTAAATGGGGGTCATCTCTTCTTCCAGCTTTATCACCAAGGCCTTTTCAGAGAGGATCTAGCACGCATATACACTGCTGAGATTGTTTCTGCAGTTTATCATCTCCATTCAAATGGAATAATGCATAGGGATCTAAAACCAGAAAATATCCTACTGGATGCTGATGGCCATGTTATGTTGACTGATTTTGGCTTAGCAAAACAATTTGAAGAGAGTACAAGATCAAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAAAGGCCATGATAAGGCTgctgattggtggagtgtaggTGTTCTACTGTTTGAGATGCTTACTGGAAAGCCGCCTTTCTGTGGTGGGAGCCGTGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATTAAGCTGCCAGCATTTTTGTCAACTGAAGCACATTCACTGTTGAAAGGGCTGTTACAGAAGGAAGCAACTAAGCGCTTAGGTTGTGGACCCCGTGGGATTGAGGAAATTAAAGGCCACAAGTGGTTTAAACCAATCAATTGGAAAAAGTTGGAAGCACGAGAAATCCAACCAAGCTTTAGGCCAGAAGTAGCTGGTAAGCACTGTGTTGCCAACTTTGAGAAACGCTGGACTGATATGCCTGTTGTGGACTCGCCAGCTGCCAGCCCAAATGGTGGAAACCCCTTTAAGGACTTCTCTTATGTGAGGCCTGCAGCCTCTTTTCTTCAAAGGAATAGTCCTGCTTGCTAA 1443 0.4179 MVSSQFSGLTMAARYKPSQTQLLFPANLPDTANTEHIELDFSDVFGPVTIDLNNIDSTTAEPVEEVSELVYDDPPVIYTRSHSLVGPSTCVCQSLKLGKLTIHETEDSLELVEHVAGETIEDIKESSFVEESLKDEDGNLMKVQRVSIEDFEILKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIIEKNHAEYMKAERDIWTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYTAEIVSAVYHLHSNGIMHRDLKPENILLDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGVLLFEMLTGKPPFCGGSRDKIQQKIVKDKIKLPAFLSTEAHSLLKGLLQKEATKRLGCGPRGIEEIKGHKWFKPINWKKLEAREIQPSFRPEVAGKHCVANFEKRWTDMPVVDSPAASPNGGNPFKDFSYVRPAASFLQRNSPAC 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0939 480 CDD STKc_AGC 157 407 IPR045270 GO:0004674|GO:0005524
Ssu3g0939 480 Pfam Protein kinase C terminal domain 429 465 IPR017892 GO:0004674|GO:0005524|GO:0006468
Ssu3g0939 480 SMART serkin_6 151 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0939 480 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 478 - -
Ssu3g0939 480 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 1 478 - -
Ssu3g0939 480 Pfam Protein kinase domain 151 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0939 480 ProSitePatterns Protein kinases ATP-binding region signature. 157 180 IPR017441 GO:0005524
Ssu3g0939 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Ssu3g0939 480 ProSiteProfiles AGC-kinase C-terminal domain profile. 408 475 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu3g0939 480 Gene3D Transferase(Phosphotransferase) domain 1 231 426 - -
Ssu3g0939 480 Gene3D Phosphorylase Kinase; domain 1 148 448 - -
Ssu3g0939 480 ProSiteProfiles Protein kinase domain profile. 151 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0939 480 SMART pkinase_C_6 408 467 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu3g0939 480 SUPERFAMILY Protein kinase-like (PK-like) 148 467 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0939 Ssu-Chr3 22319175 22322612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0939 1 477 AGC Kinase Gene Family AT3G08720 69.023 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Ssu3g0939 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0939 K04688 - gmx:100804819 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0939 3 22319175 22322612 Ssu3g0939 3 22319175 22322612 ECH