Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0938 ATGGCTTCCCTACTCCCTACAACTGCAACCACACTTCAACATAATCATACAATCTGCTTCTCTCCTCTGAAACCCACCACCCCAAATAACATTTCCTTCTCAACAAACCGTTTCAAGAGTAACTCTGGAAAGTGCAATGCATTTTTTGGTAACTTCCCCAAAGACTTGTTGGAGACCACTTTTCATGTGGACCAGTTTCCTATCTTCCAATCAGTGTTAGTGAAGTTTCAGAATGTAACTGAAGACTTATCAGACATGCAGAGGTGGGGGTTTGTCATACTTGCAGGGCTGACATGGGCTTATTTAACTGCAAGGCCGGGTGTTCTTGTTGGCGCCATTGATGCATTCCTTTTGGCTCCTATGCAACTGCTTTTGGACAGTTTATCTGGAAGGAGAAATCTGAAGAGGACTGATTTTCTTATTGTAGATAAGGTAGGAGAAGGGTCCTTTGGTGTTGTTTATTCAGGTGTTTTGGTCCCAAAGAATGTAGATGTACAAGAGTGGATGCAGAGAAGTGAAAGAGGCAAGGTGACAAAGTTGGATGCCAAATCTAGGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCAGAGGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGACTCTCTAGAGCAGCTCCTGAAACATGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGATAAAACCAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGGCCGCTCTCTTGCTGATTACATGGCGGATCAAAACTTCCCTTCAAACTTGGAGTCTATCATGTTTGGACGTGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATCATTACATCTCTTAAGAAAATTCACGACACAGGCATTGTTCACAGGGATGTTAAGCCTGCCAACTTGGTGGTTACCAAAAGGGGGCAGATTAAACTCATTGATTTTGGTGCTGCAACAGACCTTCGAATTGGAAAGAATTATGTTCCCAATTGCACCCCTTTGGATCGTGACTACTGTCCCCCTGAACTATATGTGCTACCAGAAGAAACACCAAGTCTTCCACCAGAGCCAATTGCAGCTTTCCTTTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGACATGTATTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCAACCTTAAGGTCTCCAGCTGCTTTgaagaatttcaatttggagATAAGAACATGTGGATATGATTTGAACAGATGGAGGGCATCATCTCGCATGAGGTCTGACTTCCAAATTCTTGATAGTGACTCTAATAGAGGGTGGGACTTAGCAACAAAGCTTATTTCCAAGAGAGGTTCCCAAAGAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTGGGTGGGGATCAGGCCGCTGTAGTCCTTTCAAAATTAAGCTTAAGCACAAAGTGA 1506 0.4236 MASLLPTTATTLQHNHTICFSPLKPTTPNNISFSTNRFKSNSGKCNAFFGNFPKDLLETTFHVDQFPIFQSVLVKFQNVTEDLSDMQRWGFVILAGLTWAYLTARPGVLVGAIDAFLLAPMQLLLDSLSGRRNLKRTDFLIVDKVGEGSFGVVYSGVLVPKNVDVQEWMQRSERGKVTKLDAKSRDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGGRSLADYMADQNFPSNLESIMFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNCTPLDRDYCPPELYVLPEETPSLPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEIRTCGYDLNRWRASSRMRSDFQILDSDSNRGWDLATKLISKRGSQRRGRLSAAAALRHPYFLLGGDQAAVVLSKLSLSTK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0938 501 Gene3D Phosphorylase Kinase; domain 1 127 249 - -
Ssu3g0938 501 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 499 IPR044803 GO:0004674|GO:0009579
Ssu3g0938 501 SUPERFAMILY Protein kinase-like (PK-like) 136 483 IPR011009 -
Ssu3g0938 501 SMART serkin_6 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0938 501 Gene3D Transferase(Phosphotransferase) domain 1 280 484 - -
Ssu3g0938 501 Pfam Protein kinase domain 289 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0938 501 ProSiteProfiles Protein kinase domain profile. 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0938 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Ssu3g0938 501 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0938 Ssu-Chr3 22314622 22317815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0938 139 338 MAP Kinase Kinase Kinase AT3G13530 24.631 4.63e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Ssu3g0938 Pkinase 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0938 - - gmx:100795624 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0938 3 22314622 22317815 Ssu3g0938 3 22314622 22317815 ECH
Ssu3g0938 3 22314622 22317815 Ssu2g0914 2 46057145 46060004 PCT