LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g0935	ATGATGAGGAGCATGAATCAATACCATGTTTGTGTTCCATTGTTTGTGTGCTTGGTATTGGCTATTGAAGTTGTTGTAGCACAGGATTTTAAGCCCAAAGATAATATCCTGCTGAGTTGTGGGGGTCCTCCGGTTAGTACTGATACTGATGGCCGTAATTGGACCACTGACATTGGTTCCAAGTTTGATTCCTCCTCCGGGAAATCCACCACCGTGTCGCCGGCGGCGACTCAAGACCCTGCCGTCCCCCAGGTGCCCTACATGACGGCGCGCGTGTTCCACGCGCCGTTTACCTATGCTTTTCCGGTGGCTTCTGGTTGGAAGTTTCTCCGGCTGCACTTTTACTCGGCTTCTTACTCCGGCCTCAATGCATCCGATGCGCTGTTTGCCGTGACGGCGCAGTCTTACACACTTCTTAGGAACTTCAGTGTTGCTCAGACCACCTTGGCCTTGAATTATGCCTACATTGTGAAGGAATACTCCATCTATGTGGAAGGGCAAAGCTTGAATGTGACTTTCACCCCATCAACCAACGCCTCGAATGCGTATGCGTTTGTTAATGGGATTGAGGTTGTGTCCATGCCCGAGATTTATACTTCCACTGATGGAACTTTGATGATGGTGGGTACAAATACTCCTGTCACTATTGACAACAGCACTGCACTTGAGAATGTTTATAGGTTGAATGTGGGTGGGAATGATATCTCTCCCTCGCGTGACACTGGTATGTTTAGGTCATGGTTTGATGACATGCCCTTCCTCTTTGGGGCTGCATTTGGAGTTACTGAGCCTGCTGATCCGGATGTGAAGTTTGAGTATCCTCCGGGCACACCAAGTTATATTGCTCCGCTTGATGTCTACAGAACAGCCAGAACAATGGGCCCGAACCCCAAGATCAACACGAATTACAACTTGACTTGGATCTTCAACATTGATTCTGGGTTTTCCTATCTCGCGAGACTCCATTTTGCTGAGGTAGCAGATAATATAACCAAGATTAATCAAAGAGTATTTGATATATTCCTCAATAATCAAACTGCTATGCCCCAGGCTGATGTTATTGCCTGGGCACACGATTTTGGCCTTTCACATTCAAATGGGGTTCCAGTGCATAAAGATTATGTTGTATTTGTTCCCAATGGAGAACCACGGCAGGACCTGTGGCTTGCGCTGCATCCAGATCCAACTGACAAGCCCGAGTATTATGATGCAATCTTGAATGGAGTGGAGGTATTCAAAATTAGTGATGCTGCTGGTAATCTGGCAGGGACGAATCCTATTCCTCCTCCCGTGCAAGACATAATTGACCCGTCAATGGCTAGGGCATCTAATCATGGTAAATTAAAGAATCATACAGGCGTAATTGCGGGAGGTGTTGCTGGAGGAGTTGTTTTAGTGCTTGTGATTGGGCTATTTGCTTTTGCTGCATCCCGTCGTCGTAGGCATGGAAAGGATTCTGGTGCAAGTGAAGGGCCATCTGGCTGGCTTCCGCTTTCTCTTTATGGTAATTCACACTCTGCAGCTTCTGCCAAGACCAACACAACAGGAAGTTATGCATCCTCTCTCCCATCAAACCTTTGTCGTCATTTCTCATTTGCTGAAATCCAGGCTGCCACGAACAACTTTGATGAGGCGTTGCTTCTTGGTGTGGGAGGATTCGGTAAGGTTTACAAAGGAGAAATTGATGGCGGAACAACCAAAGTAGCAATTAAACGCGGGAATCCACTATCTGAGCAGGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCACCGCCACCTTGTTTCACTGATTGGCTACTGTGAAGAAAACACTGAAATGATCCTTGTCTATGATTATATGGCCTATGGAACACTCAGGGAGCATCTGTACAAGACCCAGAAGCCTCCACTTCCATGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATCTACACACCGGTGCTAAGCACACTATTATACACCGTGACGTGAAGACAACAAACATTTTACTGGATGAGAAGTGGGTGGCTAAGGTTTCTGATTTTGGATTGTCAAAAACAGGTCCAACATTGGATAATACCCATGTGAGTACTGTAGTAAAGGGTAGTTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTGACTGACAAATCCGATGTGTACTCATTTGGGGTGGTTCTCTTTGAGATATTGTGTGCTCGACCAGCTTTGAACCCGGCCCTTGCTAAGGAGCAAGTGAGCCTGGCTGAATGGGCAGCTCACTGCTACAAGAAAGGCATTCTTGACCAAATCATTGATCCTTATCTGAAGGGCAAGATAGCTCCAGAATGCTTCAAGAAGTTTGCTGAGACTGCGATGAAGTGTGTGGCTGACCAGGGCATTGATAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCTTTGCAGCTGCAAGAAAGTGCAGAGGAGAGTGGCAACGGCTTTGGTGGCATTCATGAAGAAGAGCCATTGTTTGCAGATTCTAAAGGAAAGAAGGACTCTGATCCATTGCCGGGTTATGATGGTAATGTGACTGATTCCAGAAGCAGTGGCATTTCAATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACCCCTAGTGCTGTGTTCTCCCAGATCATGAATCCAAAAGGGCGTTAA	2700	0.4674	MMRSMNQYHVCVPLFVCLVLAIEVVVAQDFKPKDNILLSCGGPPVSTDTDGRNWTTDIGSKFDSSSGKSTTVSPAATQDPAVPQVPYMTARVFHAPFTYAFPVASGWKFLRLHFYSASYSGLNASDALFAVTAQSYTLLRNFSVAQTTLALNYAYIVKEYSIYVEGQSLNVTFTPSTNASNAYAFVNGIEVVSMPEIYTSTDGTLMMVGTNTPVTIDNSTALENVYRLNVGGNDISPSRDTGMFRSWFDDMPFLFGAAFGVTEPADPDVKFEYPPGTPSYIAPLDVYRTARTMGPNPKINTNYNLTWIFNIDSGFSYLARLHFAEVADNITKINQRVFDIFLNNQTAMPQADVIAWAHDFGLSHSNGVPVHKDYVVFVPNGEPRQDLWLALHPDPTDKPEYYDAILNGVEVFKISDAAGNLAGTNPIPPPVQDIIDPSMARASNHGKLKNHTGVIAGGVAGGVVLVLVIGLFAFAASRRRRHGKDSGASEGPSGWLPLSLYGNSHSAASAKTNTTGSYASSLPSNLCRHFSFAEIQAATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDYMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPALAKEQVSLAEWAAHCYKKGILDQIIDPYLKGKIAPECFKKFAETAMKCVADQGIDRPSMGDVLWNLEFALQLQESAEESGNGFGGIHEEEPLFADSKGKKDSDPLPGYDGNVTDSRSSGISMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR	899

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g0935	899	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	663	675	IPR008271	GO:0004672\|GO:0006468
	Ssu3g0935	899	CDD	STKc_IRAK	548	814	-	-
	Ssu3g0935	899	ProSiteProfiles	Protein kinase domain profile.	542	816	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu3g0935	899	MobiDBLite	consensus disorder prediction	841	899	-	-
	Ssu3g0935	899	Gene3D	Transferase(Phosphotransferase) domain 1	619	829	-	-
	Ssu3g0935	899	SUPERFAMILY	Protein kinase-like (PK-like)	516	815	IPR011009	-
	Ssu3g0935	899	Gene3D	Phosphorylase Kinase; domain 1	503	618	-	-
	Ssu3g0935	899	MobiDBLite	consensus disorder prediction	59	78	-	-
	Ssu3g0935	899	PANTHER	-	21	850	-	-
	Ssu3g0935	899	MobiDBLite	consensus disorder prediction	858	892	-	-
	Ssu3g0935	899	Gene3D	-	221	415	-	-
	Ssu3g0935	899	Gene3D	-	36	195	-	-
	Ssu3g0935	899	PANTHER	OS07G0166700 PROTEIN	21	850	IPR045272	GO:0004714\|GO:0006468
	Ssu3g0935	899	MobiDBLite	consensus disorder prediction	59	79	-	-
	Ssu3g0935	899	Pfam	Malectin-like domain	38	414	IPR024788	-
	Ssu3g0935	899	Pfam	Protein tyrosine and serine/threonine kinase	548	810	IPR001245	GO:0004672\|GO:0006468
	Ssu3g0935	899	ProSitePatterns	Protein kinases ATP-binding region signature.	548	571	IPR017441	GO:0005524
	Ssu3g0935	899	SMART	serkin_6	542	816	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g0935	Ssu-Chr3	22283498	22286197	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g0935	19	899	Receptor kinase-like Gene Family	AT3G51550	73.898	0.0	1329

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Ssu3g0935		Malectin_like	1.3e-39	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g0935	-		-	gmx:100499644	1636.31