Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0930 ATGATGCAACAGTCCTACTTTACCACAATACCAATTTTCCTGCTTCTACTTGTGTTTCCTCAAACTACAGCTGATCTACATTCAGAAAAGCAAGCCCTCCTTGATTTTGCTGTTGCACTTCATCATGGTCCAAAAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCATGGGTGGGAGTTACATGCAGTCATGATGGCTCCCATGTGCTTTCCGTGAGGCTTCCAGGTGCTGGACTGCGCGGTTCTCTCCCACCAAACACGCTTGGTAAGCTAAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACAGCTTGAGGGGGAACCTTCCAACTGACCTACTTGCCCTTCCTTCTCTGCGCTTTATATATCTCCAACACAACAACTTCTCAGGTGATATTCCTGATTCTCTGCCACCCCAGCTTGTCTTTCTTGATTTGTCCTACAACTCTTTCAGAGGACAAATTCCAGCCCCAATCCAAAACTTGACACATCTAATAGGACTGAACCTCCAAAACAACTCACTCACAGGACCTATTCCTGATGTTAACCTTCCTAACCTTAAGAATTTGGATTTGAGCTTCAACTACCTGAATGGTTCTATTCCTTCAGGTCTCCATGAGTTTCCTGCCTCCTCATTTAGAGGGAATCTGATGTTATGTGGAGCACCTTTGAGAGAATGTTCTTCAGTTTCCCCTACTACCACCATATTGTCTCCACCAACAGTCTCCCCCAAACCAAGTGATCTATCAAACAAGAAAATGAGCACCAgaacaaaaatatcaattgttTTGGGGAGTTTCGCACTGTTGTTTCTTCCAGGTCTTATTATAGTAGTGTTCTGCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTAGCACCTACAGAGAAAGGTGAGAAGCTTAAGGAGGACTTTGGGAGTGGTGTGCAAGAACCTGAGAAAAACAAGCTTGTATTCTTTGAAGgttgttcttataattttgatcTGGAGGACTTGTTAAGAGCTTCAGCTGAAGTGCTTGGGAAGGGAAGTTGTGGAACAACATATAAAGCTATCTTGGAGGATGGAACAGCAGTGGTTGTCAAGAGGCTAAAAGAAGTGGCGATGGGGAAAAAAGAATTTGAGCAGCAAATGGAGATTGTCCAAAGACTTGATCATCACCCAAATGTAATTCCCCTTCGGGCTTACTACTATTCCAAAGATGAAAAACTAATGGTTTATGACTACTCAACAGCCGGCAGTTTTTCCAAGTTATTGCATGGAACAAGGGAAACTGGACGAGCTCCACTAGATTGGGATACAAGATTGAAGATCATGGTTGGAGCTGCTAGGGGCATTGCTCATATCCACTCAGCCAATGGAAGGAAATTTGTCCATGGCAATATAAAATCATCTAATGTGATTCTCTCAATAGATCTTCAGGGCTGCATATCAGATTTTGGCCTAACTCCCCTAACAAATTTCTGTGCCTCCTCCAGAAGTCCAGGCTATGGAGCACCTGAAGTTATCGAAACACGAAAATCCACTCAAAAATCTGATGTGTACAGCTTTGGTGTTCTCTTTCTTGAGATGCTGACTGGCAAAACACCGGTTCAGTATTCAGGGCACGATGAAGTGGTTGATCTACCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAGTGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGATATCCAAATATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGCGTGGCAGTGATGCCTGACACAAGACCTTCAATGGAGGAAGTTGTTAGGACAATTGAAGAAATTGGAGCATCCATTTATTAA 1830 0.4251 MMQQSYFTTIPIFLLLLVFPQTTADLHSEKQALLDFAVALHHGPKVNWNSSTSICTSWVGVTCSHDGSHVLSVRLPGAGLRGSLPPNTLGKLNGLISLSLRSNSLRGNLPTDLLALPSLRFIYLQHNNFSGDIPDSLPPQLVFLDLSYNSFRGQIPAPIQNLTHLIGLNLQNNSLTGPIPDVNLPNLKNLDLSFNYLNGSIPSGLHEFPASSFRGNLMLCGAPLRECSSVSPTTTILSPPTVSPKPSDLSNKKMSTRTKISIVLGSFALLFLPGLIIVVFCCFKKKVGEQNVAPTEKGEKLKEDFGSGVQEPEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEDGTAVVVKRLKEVAMGKKEFEQQMEIVQRLDHHPNVIPLRAYYYSKDEKLMVYDYSTAGSFSKLLHGTRETGRAPLDWDTRLKIMVGAARGIAHIHSANGRKFVHGNIKSSNVILSIDLQGCISDFGLTPLTNFCASSRSPGYGAPEVIETRKSTQKSDVYSFGVLFLEMLTGKTPVQYSGHDEVVDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAVMPDTRPSMEEVVRTIEEIGASIY 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0930 609 PANTHER OS05G0480400 PROTEIN 10 606 - -
Ssu3g0930 609 ProSiteProfiles Protein kinase domain profile. 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0930 609 SUPERFAMILY L domain-like 44 224 - -
Ssu3g0930 609 SUPERFAMILY Protein kinase-like (PK-like) 338 601 IPR011009 -
Ssu3g0930 609 CDD STKc_IRAK 340 604 - -
Ssu3g0930 609 Gene3D Ribonuclease Inhibitor 140 229 IPR032675 -
Ssu3g0930 609 Gene3D Ribonuclease Inhibitor 27 139 IPR032675 -
Ssu3g0930 609 Pfam Protein kinase domain 337 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0930 609 PANTHER OS05G0588300 PROTEIN 10 606 - -
Ssu3g0930 609 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Ssu3g0930 609 Gene3D Phosphorylase Kinase; domain 1 301 409 - -
Ssu3g0930 609 Gene3D Transferase(Phosphotransferase) domain 1 411 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0930 Ssu-Chr3 22221305 22223487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0930 24 607 Receptor kinase-like Gene Family AT5G58300 61.525 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu3g0930 Pkinase 6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0930 - - gmx:100810832 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0930 3 22221305 22223487 Ssu3g0930 3 22221305 22223487 ECH