Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0925 ATGTATTTAAAACTATTTCCTTCGTATGATTCCTACTCAAATATGTTCAATGCAAGTGAGGTCTATCGCATTAAAACCATGTTTACATCATGGCAATTTCCTCCCAATCATTTTTTTGGACCATATGAACTCCTGAACTTCACTCTTCTTGGACCTTATGCAAATAATTCAGAGAAGAGTAAAAGTAGTACAGATACAGTCATATTAGTTGCTGCTTTAATAGCAGCTGCTGCTTGTATTTTAGCAACATCTGCTATAATCATTCTCCTGATTTCTATAAGACGTGGCAAATTCCAGCACTTGATTTCCAGGAAACCCCCTAACGTATCTATTAAACTAGACAGCGTGAAAGAATTCACTTTCAGAGAATTGGCTCTTGCTACGAACAATTTTAGCAGCTCAACTAAAATTGGCCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATCTGGTGGAACACTTGTGGCCATTAAACGGGCAGCAGAAACTTCCTTACAAGGCCAAAGAGAGTTTTTGACTGAGATTGAGTTTTTATCAAGGTTACACCATCGAAATCTTGTCTCGCTGATTGGATACTGTGATGAACAAAAGGAGCAGATGCTTGTTTATGAATTCATGCCCAATGGCACCCTAAAGGACTGGATTTCGGGTAAAAGTGAAAAGGCCAAGGAAAGACAAAATTTTGGTATGGGGTTGAAAATTGCAATGGGTGCAGCCAAAGGCATACTATATCTGCACACAGAGGCTGACCCTCCTGTATTCCACCGAGATATTAAAGCCAGCAACATACTTCTGGACTCCAAACTTACAGCTAAAGTGGCTGATTTTGGACTGTCACGGCTTGCACCATACGAAGAAGGAAGTGGTACTAAATACGTATCAACAGTTGTGAGAGGAACACCAGGTTACCTGGACCCAGAATATGCGTTGACTCATATTTTTTCTGACAAAAGTGATGTCTATAGCCTAGGAATTGTGTTTTTGGAGCTTTTGACGGGCATGCAACCAATATCACGTGGGAAAAACATTGTTAACGAGGTTAATGTGGCTTGCCGGTCTGGCATGATATATTCCATTATAGAGAGCAGAATGGGGTTATATCCATCTGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGTTGTTGCCAAGACAATCCAGAGGAGAGACCATCAATGCTAGATGTGGTGAGGGAACTAGAAGACATTGTTGCAATGTTTCCAGAAAGTGAAACCAGTTTCCCAGATGTCACCTTAGATAACTCAAGTGAAATGGCACCCTCATCATCTTTAGGATCTAATGCGGCAAGGGAGGACCGACACAAGTACGCATATGTGTCAGGAAGTAATCTTGTCAGTGATGTCATTCCCACCATTGCTCCTCGCTGA 1392 0.4116 MYLKLFPSYDSYSNMFNASEVYRIKTMFTSWQFPPNHFFGPYELLNFTLLGPYANNSEKSKSSTDTVILVAALIAAAACILATSAIIILLISIRRGKFQHLISRKPPNVSIKLDSVKEFTFRELALATNNFSSSTKIGQGGYGNVYKGILSGGTLVAIKRAAETSLQGQREFLTEIEFLSRLHHRNLVSLIGYCDEQKEQMLVYEFMPNGTLKDWISGKSEKAKERQNFGMGLKIAMGAAKGILYLHTEADPPVFHRDIKASNILLDSKLTAKVADFGLSRLAPYEEGSGTKYVSTVVRGTPGYLDPEYALTHIFSDKSDVYSLGIVFLELLTGMQPISRGKNIVNEVNVACRSGMIYSIIESRMGLYPSDCLDKFLTLALSCCQDNPEERPSMLDVVRELEDIVAMFPESETSFPDVTLDNSSEMAPSSSLGSNAAREDRHKYAYVSGSNLVSDVIPTIAPR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0925 463 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 1 439 - -
Ssu3g0925 463 ProSiteProfiles Protein kinase domain profile. 131 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0925 463 SUPERFAMILY Protein kinase-like (PK-like) 116 423 IPR011009 -
Ssu3g0925 463 ProSitePatterns Protein kinases ATP-binding region signature. 137 159 IPR017441 GO:0005524
Ssu3g0925 463 MobiDBLite consensus disorder prediction 417 436 - -
Ssu3g0925 463 CDD STKc_IRAK 137 404 - -
Ssu3g0925 463 Gene3D Transferase(Phosphotransferase) domain 1 207 416 - -
Ssu3g0925 463 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 439 - -
Ssu3g0925 463 SMART serkin_6 131 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0925 463 Pfam Protein kinase domain 132 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0925 463 MobiDBLite consensus disorder prediction 417 435 - -
Ssu3g0925 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Ssu3g0925 463 Gene3D Phosphorylase Kinase; domain 1 103 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0925 Ssu-Chr3 22087966 22092182 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0925 1 413 Receptor kinase-like Gene Family AT5G01950 57.041 1.92e-154 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Ssu3g0925 Pkinase 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0925 - - ccaj:109788949 758.829