Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0923 ATGCCGGCTCTGAGAATTCATGGATATGCCTTGGCTGTTTCGTTTTATCTTATCATCCTCATAGCAGCCTCACAACCAACGGATCCTTCTGAAGTTGATGCACTGATAAACATCAAGAAAAGTTTGATTGATCCTCAGGACAATCTGAGGAACTGGAATAAAGGTGATCCCTGTGGAAGAAACTGGACTGGGGTTTCGTGTTTTGATAGGAAGGGGGCTGATGGGTACTTCCATGTTAGTGAGATCTACTTAATGACAATGAATCTCTCGGGAAGTCTATCACCTCAGCTTGGTCAGCTATCCCAGCTCGAGATACTGGATTTCATGTGGAACAATCTGAAAGGCACAATACCAAAGGAGATTGGAAATATTAAATCATTGAGACTCTTGCTCCTGAATGGGAACACGTTATCTGGTAGTTTACCAGATGAGCTTGGCAACCTTCCAAATTTGAATCGATTCCAAGTAGACGAAAACCAATTGTCAGGTCCTATACCAGAGTCATTTGCCAACTTGGTCAGTGTTAAACACCTTCACATGAACAACAACTCATTTAATGGTCAACTTCCATCCGCACTTTCAAAGCTATCAAATCTTATACACTTGCTTGTGGACAACAATGACTTATCTGGCTATCTTCCACCAGAATTCTCCAAGTTACAAGGGTTGGCAATACTCCAGCTTGATAACAACAATTTCAGTGGTAGTAGAATTCCTACTACCTATGCAAACTTAACCAGGCTAGTGAAATTAAGTCTAAGAAACTGTAGTCTGCAAGGAGCTGTTCCTGATTTCAGTTCAATACCCAACCTTACCTATTTAGATCTTAGCTGGAATCAGTTCAGCGGACCCATACCATCAAATAAACTGGCAGACAATATGACAACTATTGATCTGTCCAGTAATCATCTCAATGGATCTATTCCTCGAAGCTTCTCATATccttatcttcaaaacttGTCACTTGCGAACAATTTACTGTCTGGGTCCATCCCTGCAAGCATATGGCAGAACATGTCCTTCACTGAGAAAGCTAAACTTACAATTGATCTCCATAACAACTCATTTTCGAATGTTTTGGGAAATCTGAACCCCCCGGAAAATGTGTCCTTGAGGCTTTCTGGTAATCCTATCTGCAAGAATTCTAACATACAAAGTATTGGTCAATATTGTGGACCTGAAGGAGATAAGGCAGCCCAAGACTCAACAAACTCAACAACTGTCTGCCCAGTTCAATCTTGTCCAGTGGATGACTTTTATGAATATGCCCCCTCTTCCCCAGTTCGTTGCTTTTGTGCAGCACCTCTGAGAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTCCTCCCTATATAGCTAGTTTTGAACAATATATAACCAAGTCCTTAAACTTAGAGCTCTATCAACTGTTCATAGATTCGCACGCTTGGGAAGAGGGACCTCGTCTTAGAATGTATTTGAAACTCTTCCCTTCCTATAATGATTCCCATTCTAATACGTTCAATACAAGTGAGGTCCGTCGCATTAAAGGCATATTTACATCATGGCGATTTCCTCGCTCTGATTTTTTTGGACCATATGAACTCCTGAACTTCACTCTTCTTGGACCTTACGCAGATATAATTCTTGATTCGGAGAAGAAAAACACTAGTGTGGGCATAAAAATTGCTGTAGTAATAGCAGCTGCTGCGTGTGTTTTAGCAATATCTGCAATAATCATTCTCCTGATTTCTAGAAGACATATGAAATACCAGAAAATGATTTCCAGGAAAGGAACGTCTACTAATATATCTATCAAAATAGATGGCATGAAATCATTTACTTACAAAGAATTGGCTCTTGCTACTAGCAAATTTAATATCTCAACTAAAGTTGGCCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATCTGATGAAACTTTTGTGGCCGTTAAGAGAGCAGAAGAAGGTTCCTTACAAGGACAAAAAGAGTTTTTGACTGAGATTGAGCTTTTGTCAAGGTTACACCATAGAAATCTCGTCTCACTGATTGGATACTGCAATGAAAAAGGGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGgtaaaagtaaaaaaaccaAGGGAAGCCTAAATTTTAGTATGAGGTTGAGAATTGCAATGGGTGCAGCCAAAGGCATACTGTATCTGCATACAGAGGCCAACCCTCCTATATTCCACCGAGATATTAAAGCCAGTAACATTCTTCTAGACTCCAAGTTTACAGCTAAAGTGGCTGATTTTGGACTGTCACGGCTTGTACCATGCTTAGATGAAGAAGGAACTGCTCCTAAATATGTGTCAACAGTTGTGAAAGGAACACCAGGTTACCTGGACCCAGAATATTTGTTGACTCATAAGCTGAGTGACAAATCTGATGTCTATAGCCTGGGAATTGTGTTTCTTGAGCTTTCGACAGGCATGCAACCAATATCACATGGGAAAAACATTGTCCGCGAGGTTAATACGGCTCGTCAATCTGGCACAATATATTCCATCATAGACAGCAGAATGGGGTTATATCCATCTGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGTTGTTGCCAAGACAATCCAGAGGAGAGACCATCAATGCTTGATGTGGTGAGGGAACTGGAAGATATCATTGCAACGTTGCCCGAAACTGAAACTCTTTTCTCAGATGTTAGCTTAGACAGTTCTGGTAACATGGCACCCTCATCATCAGCATCAGCATCAGCATCAGGATCCCATGTGACAAGGGAGGAGCAACACATGTCCTTATATGTGTCAGGAAGTGATCTTGTCAGTGATATCATTCCCACCATTGTTCCTCGCTGA 2883 0.4069 MPALRIHGYALAVSFYLIILIAASQPTDPSEVDALINIKKSLIDPQDNLRNWNKGDPCGRNWTGVSCFDRKGADGYFHVSEIYLMTMNLSGSLSPQLGQLSQLEILDFMWNNLKGTIPKEIGNIKSLRLLLLNGNTLSGSLPDELGNLPNLNRFQVDENQLSGPIPESFANLVSVKHLHMNNNSFNGQLPSALSKLSNLIHLLVDNNDLSGYLPPEFSKLQGLAILQLDNNNFSGSRIPTTYANLTRLVKLSLRNCSLQGAVPDFSSIPNLTYLDLSWNQFSGPIPSNKLADNMTTIDLSSNHLNGSIPRSFSYPYLQNLSLANNLLSGSIPASIWQNMSFTEKAKLTIDLHNNSFSNVLGNLNPPENVSLRLSGNPICKNSNIQSIGQYCGPEGDKAAQDSTNSTTVCPVQSCPVDDFYEYAPSSPVRCFCAAPLRIGYRLKSPSFSYFPPYIASFEQYITKSLNLELYQLFIDSHAWEEGPRLRMYLKLFPSYNDSHSNTFNTSEVRRIKGIFTSWRFPRSDFFGPYELLNFTLLGPYADIILDSEKKNTSVGIKIAVVIAAAACVLAISAIIILLISRRHMKYQKMISRKGTSTNISIKIDGMKSFTYKELALATSKFNISTKVGQGGYGNVYKGILSDETFVAVKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEKGEQMLVYEFMPNGTLRDWISGKSKKTKGSLNFSMRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPCLDEEGTAPKYVSTVVKGTPGYLDPEYLLTHKLSDKSDVYSLGIVFLELSTGMQPISHGKNIVREVNTARQSGTIYSIIDSRMGLYPSDCLDKFLTLALSCCQDNPEERPSMLDVVRELEDIIATLPETETLFSDVSLDSSGNMAPSSSASASASGSHVTREEQHMSLYVSGSDLVSDIIPTIVPR 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0923 960 CDD STKc_IRAK 627 896 - -
Ssu3g0923 960 ProSiteProfiles Protein kinase domain profile. 621 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0923 960 ProSitePatterns Protein kinases ATP-binding region signature. 627 649 IPR017441 GO:0005524
Ssu3g0923 960 Pfam Protein kinase domain 622 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0923 960 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Ssu3g0923 960 Gene3D Ribonuclease Inhibitor 192 392 IPR032675 -
Ssu3g0923 960 SUPERFAMILY Protein kinase-like (PK-like) 606 914 IPR011009 -
Ssu3g0923 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
Ssu3g0923 960 Gene3D Phosphorylase Kinase; domain 1 592 696 - -
Ssu3g0923 960 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 12 928 - -
Ssu3g0923 960 SUPERFAMILY L domain-like 27 287 - -
Ssu3g0923 960 SUPERFAMILY L domain-like 238 384 - -
Ssu3g0923 960 Gene3D Ribonuclease Inhibitor 28 191 IPR032675 -
Ssu3g0923 960 Gene3D Transferase(Phosphotransferase) domain 1 697 909 - -
Ssu3g0923 960 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 928 - -
Ssu3g0923 960 SMART serkin_6 621 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0923 Ssu-Chr3 22042898 22052459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0923 5 905 Receptor kinase-like Gene Family AT5G01950 62.541 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Ssu3g0923 Pkinase 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0923 - - gmx:100815005 1581.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0923 3 22042898 22052459 Ssu3g0923 3 22042898 22052459 ECH