Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0916 ATGGAAGCCAACAACAACGGCGACGTGTTCAGGCCTTCTTCGTCTCCCTCCTCTTCCCCCAATTCGAGACGATACTCGGGAATCCTGTCCGCGTCGAACATCATCCAGGCGCCGCTGTCGGTGCTCTTGGAATATTCCGGCCTCCTTCCGTCACGGTCCGCCCACCACAGCAACCCGGGCCCCGACGCCGTCAGCAGCGACGGCGAGGTTTCGATTAGGATCATCGGGGCGACCGAGCAGGAGCAGCAGCAGCAGAGGGAGGAACAGCAGGCCCCTCCTAATGGCGGCGGTTTGGTGGTGGGGCTCTCGCATTCCCAGAACGACGCCGTGTTGCCTTCGGCTGCGTCGCCGCGCGGCGACGCCGAGGGCGCGGGGGATGGCGCCGCCGGCGGGGACGGCGTGGCGAGGGACTCCTCTTACCAGAGGTACGACATTCAGCACGCGGCCAGGTGGATTGAGCAGGTGTTGCCGTTTTCGTTGCTTCTCTTGGTGGTCTTCATCAGGCAGCATTTGCAAGGGTTTTTCGTGACCATTTGGATTGCTGCGGTGCTTTTCAAGTCGAATGATATTCTGAGGAAGCAGACTGCGCTGAAGGGAGAGAGGAAGATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGcgcttcatgtggttggagttTATTGGTGGTATCAGAATGATGATCTAATGTGTCCCTTGATCATGCTTCCTCCCAAGGATATACCGCCTTTCTGGCACGCGATTTTCATCATCATGGTCAATGATACTTTGGTCCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTACCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTATCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATACGGAAGCCTCTTTTCATCACTGATGACGGGATTGTATCTAACATTTAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGTAAAGAAATGCACTATGGAGCTTATGCAACGTCAGAGCAGGTCAATGCAGCCGGTGACCTTTGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTACGCTGTAAACATATTTTCTGTGAAGACTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCGGCAGACCTTAGGTCATTTGGGGATGGCTCCACTAGTTTGTATTTCCAGTTATTCtga 1305 0.5134 MEANNNGDVFRPSSSPSSSPNSRRYSGILSASNIIQAPLSVLLEYSGLLPSRSAHHSNPGPDAVSSDGEVSIRIIGATEQEQQQQREEQQAPPNGGGLVVGLSHSQNDAVLPSAASPRGDAEGAGDGAAGGDGVARDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLIGISVGFALHVVGVYWWYQNDDLMCPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLYFQLF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0916 434 ProSiteProfiles Zinc finger RING-type profile. 373 411 IPR001841 -
Ssu3g0916 434 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 434 - -
Ssu3g0916 434 SMART ring_2 373 410 IPR001841 -
Ssu3g0916 434 MobiDBLite consensus disorder prediction 1 25 - -
Ssu3g0916 434 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 434 IPR044235 GO:0061630|GO:1904294
Ssu3g0916 434 CDD RING-HC_RNFT1_like 372 411 - -
Ssu3g0916 434 SUPERFAMILY RING/U-box 365 416 - -
Ssu3g0916 434 Pfam Zinc finger, C3HC4 type (RING finger) 371 414 - -
Ssu3g0916 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 421 IPR013083 -
Ssu3g0916 434 ProSitePatterns Zinc finger RING-type signature. 388 397 IPR017907 -
Ssu3g0916 434 MobiDBLite consensus disorder prediction 79 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0916 Ssu-Chr3 21902392 21905928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0916 12 434 C3H Transcription Factor Family AT5G01960 73.131 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0916 - K22379 gmx:100818546 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0916 3 21902392 21905928 Ssu3g0916 3 21902392 21905928 ECH