Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0914 ATGGCTGCAAATTCTGGGAATATCTCGTTTGCATTATCTCAGTCTAGTTCACAGGTTCATGGGGATAATGATTCTGTCCAGGTTGTGGTGTGTTCTCTTTGTCAAAAGGCACTATCACCTGATAATGAGATGGCAAGTGATCTTGCTAGCAGTGGTGTGTGTGGTGATTGTAAATTTTTGTTACTTGAAGACTTTGAGAATCATACAGTTACCCAAAGCTCACGGAGGAGGCTTAGAGGAAGATTCAGGCACAGCAGTTCTGAATCCATGGAGAATAATTTGTCACAACAGATCCACCATATGGTTAATACTGCAAGGCAGCATCAATCACCTGCATCTGGGGAGGATGATCAACTTGTAGATGGTGACACCCCTGCTTGGTCATTGCAATATGCTAGTACCCATACTACCCCCAGTGGGTCTAGAAGGTGGAGGCAGGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTGGACTTCTCTTTATGGTGAAAATGAATCAAGTGCGAGTTTTAGAAGGTACAGGGTTCCCCATGGCGAGACTGATTCTTTCTCTCACAGTGCTTATGGAGGTGACTCAGATATCTCTATGGATACACATAGTTTTGTAGGCACTGGAATCTTTAATTTACCAAATGAAGGAGATGAGTTTGATAGTGACACTGACATAGATCCAATGCATGCTGGCCTAAGCCAAGGGATTTCAGATGAAGACGATGAAGAAGAggatgaagaggaagaggaagatgaagaagaggatgaagaggaagaggaagatgaagaagtGGATGAAGATGGAGAGGAGgcagaagaggaggaggaggagggggaTAGGGAATGGGAATTAGCCGAGGCTGAGGAAGCTGAAGCCACAGCCCgccttcaaatatttttcaccTCAAGTCCTAGTGAGAGCAGGGATCGCATTAATTGGGAACAAAGGTTTAATTCTACTGAGTCTGAGGGAATGTTTGGCCAGATAATCAGGGATACCTGGCAAGCTTTGGAGGATGTTGATTTACCTCATAGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCGAGACGAGGAGCACCTCCTGCTTCTGTGTCTTTTGTGACTAATCTGCCACGTGTAGTCATTGGCAAGGAACATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCACCTGGCACTGAAGTAAATCAACTTCCCTGCTCTCACGTTTATCACATCAATTGCATTTTGCCATGGTTGAGCGCACGAAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACTGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATAGATGAAACAGATGGTAGTTCCTCTGATGTTTCTGATGGAGATGAGGTGAATGAGGAGGATGGCAGTAGTCAAGGTGGAATACGGCAGAGAGTTGTGAGCTCAGTTTCTACCAATAATTCTTCTGCAACAAGAAGCAGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCCATTGTTAGTCTAGTGGGCATTGTTCTAGTCTTGTGGTTAGGTAATAACTCTCAGATTGAAGGGAGTAGACATCTGGGTGGTCACTACTTATCCGGGCAAAATCAGCATGCCGTTCATGTTTATGCCCCTCCTAACCAGAGGGAGAGTAGAACCAGAAGATGGTGGTGCCCATTTTAA 1761 0.4168 MAANSGNISFALSQSSSQVHGDNDSVQVVVCSLCQKALSPDNEMASDLASSGVCGDCKFLLLEDFENHTVTQSSRRRLRGRFRHSSSESMENNLSQQIHHMVNTARQHQSPASGEDDQLVDGDTPAWSLQYASTHTTPSGSRRWRQVLSDTDSDGFDNWTSLYGENESSASFRRYRVPHGETDSFSHSAYGGDSDISMDTHSFVGTGIFNLPNEGDEFDSDTDIDPMHAGLSQGISDEDDEEEDEEEEEDEEEDEEEEEDEEVDEDGEEAEEEEEEGDREWELAEAEEAEATARLQIFFTSSPSESRDRINWEQRFNSTESEGMFGQIIRDTWQALEDVDLPHRANFGDYLDARRFEDLLEHLAENDSSRRGAPPASVSFVTNLPRVVIGKEHEKHGELVCAICKDVLAPGTEVNQLPCSHVYHINCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQIDETDGSSSDVSDGDEVNEEDGSSQGGIRQRVVSSVSTNNSSATRSSRGRWFFLAAAPIVSLVGIVLVLWLGNNSQIEGSRHLGGHYLSGQNQHAVHVYAPPNQRESRTRRWWCPF 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0914 586 PANTHER OS06G0101300 PROTEIN 312 504 - -
Ssu3g0914 586 MobiDBLite consensus disorder prediction 452 474 - -
Ssu3g0914 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 448 IPR013083 -
Ssu3g0914 586 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 312 504 - -
Ssu3g0914 586 SMART ring_2 401 441 IPR001841 -
Ssu3g0914 586 MobiDBLite consensus disorder prediction 104 123 - -
Ssu3g0914 586 ProSiteProfiles Zinc finger RING-type profile. 401 442 IPR001841 -
Ssu3g0914 586 MobiDBLite consensus disorder prediction 236 283 - -
Ssu3g0914 586 MobiDBLite consensus disorder prediction 452 514 - -
Ssu3g0914 586 MobiDBLite consensus disorder prediction 493 514 - -
Ssu3g0914 586 MobiDBLite consensus disorder prediction 212 283 - -
Ssu3g0914 586 SUPERFAMILY RING/U-box 391 448 - -
Ssu3g0914 586 Coils Coil 235 276 - -
Ssu3g0914 586 Pfam Ring finger domain 401 442 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0914 Ssu-Chr3 21872460 21874220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0914 23 586 C3H Transcription Factor Family AT5G01980 42.539 1.70e-118 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0914 - - gmx:100797923 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0914 3 21872460 21874220 Ssu3g0914 3 21872460 21874220 ECH