Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0899 ATGGGCAACTGCGGAACCAGAGAGGAATCTGCCGTAGTTTCCAACGCCCAAGTGCAGCAGCTTCACCATGCGACGTCGTTTGGCGGCAGCGCGAGGAGCCAGAACGCCGGTAGCGGGAGCGAGAAGAGGCACGGTCACGGTCACAGGCACAATCTGAGCGAGTGCGCCTCGGATCTGAGCGAGTCGTGTTCGACGCCGCGCGGCAACAACACGCTGCTCTACACGCACGTGATCGCGTTCACGCTGTACGAGTTGGAGACCATAACGAAAAGCTTCCGCGGGGACTACATCCTCGGCGAGGGAGGCTTCGGCACCGTTTACAAAGGCTACATTGATGAGAACGTCAGAGTGGGACTCAAATCGCTCCCTGTAGCGGTCAAGGTCCTGAACAAGGAGGGCCTTCAGGGACATCGAGAGTGGCTCACGGAGGTGAATTTTCTAGGGCAGCTTAGGCACCCTAATCTGGTGAAGTTGATTGGGTACTGCTGTGAAGACGACCATAGGCTGCTTGTGTATGAGTTCATGTTTCGAGGGAGTTTGGAGAATCACCTATTCCGAAAGGCAACTGTCCCTTTATCATGGGCTACAAGAATGATGATTGCTCTTGGAGCTGCCAAAGGGCTTGCCTTTCTCCACAATGCTGAAAGGCCGGTAATCTATCGTGACTTCAAAACGTCTAATATATTATTAGACTCCGACTACACAGCCAAGCTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAAGGTGATGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACCTGACGGCTAGGAGTGACGTCTATAGCTTTGGCGTTGTTCTTTTGGAGCTTTTAACGGGAAGGAAATCTGTTGACAAGACTAGACCTGGAAAGGAACAGAGCTTGGTAGATTGGGCACGGCCAAAGCTCAATGACAAGAGAAAGCTCCTACAAATAATTGATCCTAGATTGGAGAATCAATACTCAGTGAGGGCAGCACAAAAAGCATGTAGCTTGGCTTACTACTGTTTGAGTCAAAATCCCAAAGCGAGACCACTAATGAGCGATGTAGTTGAGACATTGGAACCCTTACAAAGTTCAAGTGTTGGTGCAGGTGAAGTCTCATTATCTGGACCACATAGTGGGAGTGCTGGGCCTTTTGCTATGAACAAAATCTCTGACTACCGGATGCGTCACAAGTTTTCAAACAATGTTGGTCCTGGTGCTACTTGTCGGTCTCCAAACCCAAATTGCTCACCAGGTGGCCCAGCAGCATTACGGGTCAGATGA 1314 0.5038 MGNCGTREESAVVSNAQVQQLHHATSFGGSARSQNAGSGSEKRHGHGHRHNLSECASDLSESCSTPRGNNTLLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGEVSLSGPHSGSAGPFAMNKISDYRMRHKFSNNVGPGATCRSPNPNCSPGGPAALRVR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0899 437 ProSiteProfiles Protein kinase domain profile. 92 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0899 437 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 41 424 - -
Ssu3g0899 437 MobiDBLite consensus disorder prediction 414 437 - -
Ssu3g0899 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Ssu3g0899 437 ProSitePatterns Protein kinases ATP-binding region signature. 98 127 IPR017441 GO:0005524
Ssu3g0899 437 SUPERFAMILY Protein kinase-like (PK-like) 71 370 IPR011009 -
Ssu3g0899 437 Pfam Protein tyrosine and serine/threonine kinase 97 369 IPR001245 GO:0004672|GO:0006468
Ssu3g0899 437 Gene3D Phosphorylase Kinase; domain 1 56 174 - -
Ssu3g0899 437 MobiDBLite consensus disorder prediction 25 51 - -
Ssu3g0899 437 Gene3D Transferase(Phosphotransferase) domain 1 175 381 - -
Ssu3g0899 437 CDD STKc_IRAK 98 372 - -
Ssu3g0899 437 PANTHER OS01G0588500 PROTEIN-RELATED 41 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0899 Ssu-Chr3 21525509 21529119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0899 80 388 Glycoside Hydrolase AT3G07070 53.526 1.37e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu3g0899 PK_Tyr_Ser-Thr 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0899 - - gmx:102662348 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0899 3 21525509 21529119 Ssu3g0899 3 21525509 21529119 ECH