Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0897 ATGAGCAACGAGCAGGAACAACATCACAACCTACATGGCATGCCACAGCCTCATTGTGAGAGAAAAATGGTGAGAAAAAGAATGGCTTCCGAGATGGAAGTTAACGTTCACGCCGCCCCACCACACAACTCTTCCTCCGCGAGTGATTATCCTAGGTTTCCTCGTCGAAGCAGCTCCAACATGAACATGTTAGAAAAAGGGGCCACATCCACAGCAACAACGTTAGCCGCAGGTACatgtagtaataataataataacaataactatcattataataatagcaacaatagtaatagtaatagtacTAGTAATATTTCGTCAAGAGATAACGTTGCTATTCCAAATTACCCCACCGTGACGGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCCTCTGGTGTTGCTCCAAACTACAGTCACCAACACCATCATTTCCAAGGACTCGTTGAAAGCCAGGACCAGCAAAACCCTGCGCCTGCAGTGTGTGGATTCTCAGGGTTACCACTTTTTCCGTCTCAAAGCCAAAGAAACCGAGACAACAACATAAGaaacagtggtggtggtaatatTGTGGACGTGGtggcttcttcctcttcttctccttccaTGGATGACACCTCAGCAGCAACAAGTGGTTGGATCGATGGTATATTGAAGGATCTCATTCACAGTTCCAACAGTGTTTCAATTCCTCAACTAATCAGCAACGTGAGGGAGATTATATACCCTTGCAACCCCAGCCTCGCAATGGTTCTTGAATACAGGCTGCGCCTTCTTCTCACTGAGTCTCCCCCGCAAAACAAAAGAGGCACAGAAGGGGtgcctcttcctcctcctcccgTGCCCTCAGTGAAGCTCTTGAACCGTGTGGATGGCATTGTTCCTAATTTACACTTCACAGATGTATCAGGTGGTGCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTGCCTCAAATCCCTCACCacgataacaacaacaacaataacaacaacaacaacgctACGGTTTCTTTGGTTACTTtaccttcaccaccaccaccccatTATTCACCACCACAAGAGAAGCAGCCTCAGCCTCAGCCTCACCCTCAACAAGAGGAAGATCTAGGAGCAGCCAGCAGTGCTGACGTGGCACTgacaaggaagaagaaagaggagttGCGGGAACAGAAGAAGAGAGACGAGGAGGGTTTGCATCTCCTCACTTTGCTGCTTCAGTGTGCAGAAGCTGTTTCAGCTGAGAATCTAGAAGATGCCAACAAGATGTTGCTGGAGATTTCTCAATTGTCAACGCCTTTTGGCACATCAGCACAGCGCGTGGCTGCTTACTTCTCAGAAGCCATATCAGCAAGGTTGGTGAGTTCGTGTCTGGGGATATATGCCACTTTGCCACACACTCATCAAAGCCACAAGGTGGCATCGGCTTTCCAAGTGTTCAATGGTATCAGTCCTTTCGTGAAGTTCTCACACTTCACAGCAAACCAAGCCATCCAAGAAGCTTTTGAGAGGGAAGAGAGGGTGCACATCATAGATCTGGATATAATGCAAGGGTTGCAGTGGCCCGGTTTGTTCCACATTCTAGCTTCAAGACCTGGTGGAGCCCCTTATGTGAGGCTCACGGGGCTTGGTACCTCCATGGAAGCACTCGAAGCCACGGGGAAGCGTTTGTCTGATTTTGCAAATAAACTTAGCCTTCCCTTTGAGTTCTTCCCCGTGGCTGAGAAGGTTGGGAACCTTGACCCTGAGAGGCTCAATGTGAGCAAAACCGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACTTTGTGGCTATTGCAGAGGCTGGCACCTAAAGTGGTGACTGTGGTAGAGCAGGACCTTAGCAACACTGGTTCATTCTTGGGGAGGTTCGTGGAAGCCATACACTACTACTCAGCATTATTTGATTCTCTTGGGTCTAGCTATGGGGAGGAGAGTGAGGAGAGGCATGTGGTGGAACAGCAGCTACTGTCTAGGGAGATTCGCAATGTGCTAGCTGTTGGAGGGCCATCAAGGACTGGGGAGCCAAAGTTTCACAACTGGAGGGAAAAGCTTCAGCAGTGTGGGTTTAGAGGTATATCTCTAGCTGGTAATGCTGCCACTCAAGCTGGTCTACTCCTTGGTATGTTCCCATCTGAGGGCTATACCATGGTGGAGGACAATGGCATCCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCCTTCCATAGTGGCACTGCCATTACCCATCACAACTAG 2340 0.4462 MSNEQEQHHNLHGMPQPHCERKMVRKRMASEMEVNVHAAPPHNSSSASDYPRFPRRSSSNMNMLEKGATSTATTLAAGTCSNNNNNNNYHYNNSNNSNSNSTSNISSRDNVAIPNYPTVTVTTNYSTMLLPSSTTINSSGVAPNYSHQHHHFQGLVESQDQQNPAPAVCGFSGLPLFPSQSQRNRDNNIRNSGGGNIVDVVASSSSSPSMDDTSAATSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPSLAMVLEYRLRLLLTESPPQNKRGTEGVPLPPPPVPSVKLLNRVDGIVPNLHFTDVSGGAVVVNQHMLSNWGVPQIPHHDNNNNNNNNNNATVSLVTLPSPPPPHYSPPQEKQPQPQPHPQQEEDLGAASSADVALTRKKKEELREQKKRDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLSLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQAGLLLGMFPSEGYTMVEDNGILKLGWKDLCLLTASAWRPPFHSGTAITHHN 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0897 779 MobiDBLite consensus disorder prediction 39 57 - -
Ssu3g0897 779 MobiDBLite consensus disorder prediction 180 213 - -
Ssu3g0897 779 MobiDBLite consensus disorder prediction 350 369 - -
Ssu3g0897 779 MobiDBLite consensus disorder prediction 326 349 - -
Ssu3g0897 779 MobiDBLite consensus disorder prediction 37 57 - -
Ssu3g0897 779 MobiDBLite consensus disorder prediction 326 402 - -
Ssu3g0897 779 ProSiteProfiles GRAS family profile. 401 766 IPR005202 -
Ssu3g0897 779 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 132 768 IPR005202 -
Ssu3g0897 779 PANTHER PROTEIN SCARECROW 132 768 - -
Ssu3g0897 779 MobiDBLite consensus disorder prediction 86 109 - -
Ssu3g0897 779 MobiDBLite consensus disorder prediction 388 402 - -
Ssu3g0897 779 Pfam GRAS domain family 411 766 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0897 Ssu-Chr3 21481281 21484070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0897 391 767 GRAS Transcription Factor Family AT3G54220 84.817 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g0897 GRAS 6.8e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0897 - - gmx:100806779 1233.39