Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0894 ATGGCAGAGGGAAAAGGTAGAGTTTGTGTCACCGGAGGCACAGGGTTCATCGGTTCATGGATCATCAAGAGACTCCTTGAAGATGGATATGCAGTTAACACCACTATTAGATCTGACCCAGGTCGAAAGAGAGATGTTAGCTTCCTCACAAACCTACCTGGCGCATCCGGAAAGCTACAAATTTTCAGTGCTGATCTCAGCGACCCAGAAAGTTTTGGTCCAGCGGTTGAGGGGTGTGTTGGGATTTTCCACACTGCCACCCCAATTGACTTTGCACAGAACGAGCCGGAGGAAGTGGTGACCAAAAGGACCATCGATGGAGCACTGGGCATTTTGAGAGCGTGCGTGAAATCAAAGACTGTGAAGAGGGTTGTCTACACTTCTAGTGCCTCCACCGTTTCCTTCAGCGGCCCGGAAGAGAAAGATGTGGTGGATGAGAGCGTTTGGAGTGATGTGGATTTGCTTAGGAGTGTGAAGCCGTTTAGCTGGTCATATGCAGTTTCAAAGGTGTTGGCAGAGAAGGCCGCGCTCGAATTTGGGGAACGGCATGGGTTGGATGTTGTCACTCTCGTACCTCCCTTCGTTGTTGGACGCTTCGTTTGTCCCAAGCTTCCTGACTCAATTGAAAGAGCGCTGCTTTTGGTGCTTGgcaaaaaggaagaaattggTGTCACTCGTTACCATATGGTGCATGTGGATGATGTGGCTAGAGCACATATATTCCTGCTTGAGCATCCTAATCCAAAAGGCAGATATAATTGCTCACCATTCAGTGTATCCATTGAAGAGATTTCTGAACTTCTTTCAGCCAAATACCCTGAATATCAAATACCAACAGTAGAGGAGGTGAAGAAAATTAAAGGTGTCAAGTTACCACATTTAATCTCCAAGAAACTCGAGGATGCTGGTTTTGAGTTCAAGTATAGCGTCGAGGACATGTTTCAGGATGCAATTGAATGCTGCAAGGAAAAGGGTTACCTTTAG 984 0.4614 MAEGKGRVCVTGGTGFIGSWIIKRLLEDGYAVNTTIRSDPGRKRDVSFLTNLPGASGKLQIFSADLSDPESFGPAVEGCVGIFHTATPIDFAQNEPEEVVTKRTIDGALGILRACVKSKTVKRVVYTSSASTVSFSGPEEKDVVDESVWSDVDLLRSVKPFSWSYAVSKVLAEKAALEFGERHGLDVVTLVPPFVVGRFVCPKLPDSIERALLLVLGKKEEIGVTRYHMVHVDDVARAHIFLLEHPNPKGRYNCSPFSVSIEEISELLSAKYPEYQIPTVEEVKKIKGVKLPHLISKKLEDAGFEFKYSVEDMFQDAIECCKEKGYL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0894 327 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 319 - -
Ssu3g0894 327 Gene3D - 5 327 - -
Ssu3g0894 327 PANTHER DIHYDROFLAVONOL 4-REDUCTASE-LIKE PROTEIN 1 319 - -
Ssu3g0894 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 322 IPR036291 -
Ssu3g0894 327 CDD FR_SDR_e 8 304 - -
Ssu3g0894 327 Pfam NAD dependent epimerase/dehydratase family 8 253 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0894 Ssu-Chr3 21429779 21432862 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0894 4 327 Monolignol Biosynthesis Gene Families AT2G02400 36.810 2.84e-60 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0894 - K13265 gmx:100194416 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0894 3 21429779 21432862 Ssu3g0894 3 21429779 21432862 ECH