Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0892 ATGGAAGAGGGGAAAGGAAGAGTTTGTGTAACTGGAGGCACAGGGTTTATTGGTTCATGGATCATCAAGAGACTCCTTGAGGATGGTTACACTGTTAATACCACTATTAGATCTGATCCAGGGCGCAAGAGGGATGTCAGCTTCCTCACAAATCTTCCAGGTGCATCCACAAAGCTAAAAATTTTCAATGCTGATCTCAGCAACCCAGAGAGTTTCAGTGAAGCAATTGAAGGGTGCATTGGGGTGCTCCACACTGCTACTCCTATTGATTTTGCACTGAACGAGCCAGAGGAAGTAGTGACCAAAAGAACCATTGATGGAGCATTAGGCATTCTAAAAGCATGCCTGAATTCAAAGACCGTGAAGAGGGTTGTTTACACTTCCAGTGCCTCTGCTGTTTTCTGGCAGGgcaaagaagaggaagagatgGACGAGAGTTATTGGAGTGATGAAAATCTTCTTAGAGCTTTGAAGCCATTTTCTTGGTCATATTCAATTTCCAAGACCTTGGCAGAGAAGGCAGTTCTTGAATTTGGAGAACAGCATGGGTTGGAAGTTGTGACTATAATACCTACTTTTGTTGTTGGACCCTTCATTTGTCCTAAGCTTCCTGGCTCAGTTTACACCTCACTGGCTTTTCTGTTTGGTGAGAAGAATCCATTTGGTGCCACACGTATCCATATGGTGCATGTCGATGATGTGGCACGAGCACATATATTCCTGCTTGAGCATCCTAATCCAAAAGGGAGATATAATTGCTCACCATTCATTGCAACTGCTGAAGAAATAGCAGAATTTCTTTCCGCCAAATACCCACAATTTCAAATACCAACACTAGACGAGGTGAAGAAAATTAGTGGTCCCAAGCTTCCACATCTAACCTCGAAGAAACTTATGGATGCTGGATTCGAGTTCAAGTATAGCTTTGAGGAAATGTTTGAGGATGCAATTGAATGCTGCAAAGAAAAGGGTCATCTATGA 981 0.421 MEEGKGRVCVTGGTGFIGSWIIKRLLEDGYTVNTTIRSDPGRKRDVSFLTNLPGASTKLKIFNADLSNPESFSEAIEGCIGVLHTATPIDFALNEPEEVVTKRTIDGALGILKACLNSKTVKRVVYTSSASAVFWQGKEEEEMDESYWSDENLLRALKPFSWSYSISKTLAEKAVLEFGEQHGLEVVTIIPTFVVGPFICPKLPGSVYTSLAFLFGEKNPFGATRIHMVHVDDVARAHIFLLEHPNPKGRYNCSPFIATAEEIAEFLSAKYPQFQIPTLDEVKKISGPKLPHLTSKKLMDAGFEFKYSFEEMFEDAIECCKEKGHL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0892 326 Pfam NAD dependent epimerase/dehydratase family 8 252 IPR001509 -
Ssu3g0892 326 Gene3D - 5 326 - -
Ssu3g0892 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 321 IPR036291 -
Ssu3g0892 326 CDD FR_SDR_e 8 303 - -
Ssu3g0892 326 PANTHER DIHYDROFLAVONOL REDUCTASE 1 318 - -
Ssu3g0892 326 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0892 Ssu-Chr3 21405090 21407619 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0892 4 326 Monolignol Biosynthesis Gene Families AT2G02400 37.425 3.17e-60 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0892 - K13265 gmx:102659875 611.683