Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0886 ATGGAAGGAAGAGAAGGGATCAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCCTATCATATGGCACCAAGGAGTGAAGCTCCAAGCCAGGGTGGTCCTGTTCCTGAAGCAACAGCTGGAGCTATTGGTGTCTCACCAGTTAGTGTGGGATTGGATGGAACAGCAGTTAAGAAGAAAAGGGGTAGACCAAGGAAATATGGGCCTGATGGGTCTGTCACTATGGCATTGTCTCCCATGCCAATCTCATCTTCAGCTCCATTTTCTAATGACTTCTCATCTGGAAAGCGGGGCAAACCGCGGGGGATGGAGTACAAGCTGCCAAAAAAAGCTGGAGTGGATCATCTAGGTGAATCTGTTGGTACAAACTTCATGCCCCATATCATTACCGTCAATACTGGCGAGGACATTACGATGAAGGTTATATCTTTTTCCCAACAAGGACCCCGTGCTATATGCATCCTATCTGCTAATGGTGTAATTTCAAATGTCACACTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACATATGAGGGTCGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCCGGTGGGATGAGCGTGTCATTGTCGAGCCCAGATGGTCGTGTTGTAGGTGGTGGAGTTGCCGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTGCCAAGCAGCCAGCAAGATCAGAAACCAAAGAAGCCTAAGTCTGATTATGCACCAGCTAATGTCACCCCTGCCATTGCAGTGTCTTCTGCACCACCCCCTACTAATGGTGAAAAGGAGGATGTCATGGGTGGACATCTGCTGCACAGCTCAGGACCAACCCTTAACTCAAACCTTACTCCTCCCTCGGCCTTTCGTCGGGAAAACTGGGTTAACTTGCACTCCATGACGGACTCGATGAAGTCCGCCACTGATATTAACATTTCTCTACCTGATAGTTAA 1005 0.4866 MEGREGISSGVTVIGAEAPSAYHMAPRSEAPSQGGPVPEATAGAIGVSPVSVGLDGTAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPFSNDFSSGKRGKPRGMEYKLPKKAGVDHLGESVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQDQKPKKPKSDYAPANVTPAIAVSSAPPPTNGEKEDVMGGHLLHSSGPTLNSNLTPPSAFRRENWVNLHSMTDSMKSATDINISLPDS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0886 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 241 IPR005175 -
Ssu3g0886 334 MobiDBLite consensus disorder prediction 56 78 - -
Ssu3g0886 334 CDD DUF296 128 218 IPR005175 -
Ssu3g0886 334 Gene3D - 128 258 - -
Ssu3g0886 334 ProSiteProfiles PPC domain profile profile. 123 264 IPR005175 -
Ssu3g0886 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 333 IPR039605 GO:0003680
Ssu3g0886 334 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 333 - -
Ssu3g0886 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0886 Ssu-Chr3 21316825 21320702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0886 10 272 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.054 4.66e-100 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0886 - - gmx:100777213 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0886 3 21316825 21320702 Ssu3g0886 3 21316825 21320702 ECH
Ssu3g0886 3 21316825 21320702 Ssu4g2621 4 66648352 66658218 PCT