Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0884 ATGGATGCTGGAGAAGAAATTAGAGGCGGGCCTTGTGGTGCGTGCAAGTTCCTGAGGAGGAAGTGTGTGAAGGGTTGCATATTTGCACCCTACTTTGACTCATCAGACCAAGGCACTGCTCATTTTGGCGCAGTGCACAGAGTGTTTGGTGCCAGCAATGCCTCCAAGCTCCTCACCCGCGTCCCACCTCACAAGCGTCTCGATGCTGTGGTCACTCTCTGCTACGAGGCTCTTGCTAGGGCTACAGACCCCGTCTATGGTTGTGTTGCTCACATCTTCGCTCTTCAACAACAGGTTGTGAACTTGCAGGCACAGTTAGCCTATGTTCAAGCTCGTCTTTCCACATTGCGTCGAATCTCTGCGGCTGCTCCATTTCCACAACCTCAAAGTTGCTCACCCCCTAGTGATCAGCATTCCTCCTCAGATCATCATTTGGCACCAGACAACAACGGCTTGCAAAGTGCTTACATATCCATGCACTTCGATGATCACCCTCTTCAACGTCATCCAACATCATTAGAATTAAGCAGCTTTCAAAATCCATCCAATCAGCAACTTGATGATGATGACCAGGAACTCCAAGCTTTGGCTCGAGATTTTGTGTCAAGGTTCTTGCCCGGAGTAAGATTCCACCCGTCGAATTCTCACTAg 651 0.4962 MDAGEEIRGGPCGACKFLRRKCVKGCIFAPYFDSSDQGTAHFGAVHRVFGASNASKLLTRVPPHKRLDAVVTLCYEALARATDPVYGCVAHIFALQQQVVNLQAQLAYVQARLSTLRRISAAAPFPQPQSCSPPSDQHSSSDHHLAPDNNGLQSAYISMHFDDHPLQRHPTSLELSSFQNPSNQQLDDDDQELQALARDFVSRFLPGVRFHPSNSH 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0884 216 Pfam Lateral organ boundaries (LOB) domain 11 110 IPR004883 -
Ssu3g0884 216 ProSiteProfiles LOB domain profile. 10 113 IPR004883 -
Ssu3g0884 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 8 207 - -
Ssu3g0884 216 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 207 - -
Ssu3g0884 216 MobiDBLite consensus disorder prediction 132 149 - -
Ssu3g0884 216 MobiDBLite consensus disorder prediction 124 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0884 Ssu-Chr3 21278309 21282347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0884 9 214 AS2 family AT4G00210 51.584 1.14e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu3g0884 LOB 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0884 - - gmx:100791377 241.891