Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0883 ATGAGTAGCGGTAGTGGTAGTAGTAGTGGGGGTAGTGGCGGCGGCAACAGTAGTAGTGGTAGCCCTTGCGGCGCTTGCAAGTTCTTGCGGAGGAAGTGTGTGCCGGGTTGTATCTTTGCTCCGTACTTTGATTCGGAGCAAGGTACAACCCACTTTGCGGCGGTGCACAAGGTGTTTGGGGCCAGCAATGTGTCCAAGCTTCTCCTTAACATCCCAGTGCATAGGAGGCTTGATGCGGTCATCACCATTTGTTATGAAGCACAGTCTCGGCTTAGAGATCCTGTTTATGGCTGCGTTGCCCACATCTTTGCCCTTCAGCAACAgGTGGTGAGCTTACAAGCAGAACTCTCTTACTTACATGGCCACCTTGCTCAAATGGAGTTACCCCAACCACCACCCCCTCCTCCGGCGGCGGCACCACCAGTTTTCTCAATTGCCGACCTGCCGGCCGCCACCACGGTGGCAATGCCGGCCACCTATGATTTGGCTTCACTTTTTGATCCAATGGGCCAAGCTTCATGGGCCATGCAACAAAGGGCCATGGACCCACGTCACTACATGGCTGCTGCTCCATCAACCACTAGTGCTGACCTTCAAGCAGTGGCTCGTGACCTTTCGCGTAGACATGGGTCTCCTCCTACACCTCCTGCTTCATGA 657 0.5449 MSSGSGSSSGGSGGGNSSSGSPCGACKFLRRKCVPGCIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLLNIPVHRRLDAVITICYEAQSRLRDPVYGCVAHIFALQQQVVSLQAELSYLHGHLAQMELPQPPPPPPAAAPPVFSIADLPAATTVAMPATYDLASLFDPMGQASWAMQQRAMDPRHYMAAAPSTTSADLQAVARDLSRRHGSPPTPPAS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0883 218 Pfam Lateral organ boundaries (LOB) domain 22 119 IPR004883 -
Ssu3g0883 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 208 - -
Ssu3g0883 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 2 208 - -
Ssu3g0883 218 MobiDBLite consensus disorder prediction 190 218 - -
Ssu3g0883 218 ProSiteProfiles LOB domain profile. 21 123 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0883 Ssu-Chr3 21240213 21244275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0883 25 213 AS2 family AT2G45420 61.905 6.06e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu3g0883 LOB 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0883 K21994 - gmx:100790517 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0883 3 21240213 21244275 Ssu3g0883 3 21240213 21244275 ECH
Ssu3g0883 3 21240213 21244275 Ssu4g2625 4 66754576 66758392 PCT