Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0879 ATGGTACATATTAAGAGGTCTGTCTTGGAAAGTGAAGATATTGTATCTAGTCAAAATGGTGATGCCTCTCACTTGACTAAACCTTCAAAACCACTTGTTCGGAAGAGCAAGTTGGTCGTGGTAGACTTAGCAGGTTCAGAACGTGTCCATAAATCAGGAAGTGAAGGGCACATGCTAGAGGAAGCTAAATCTATCAATCTTTCACTTAGTTCACTGGGAAAATGTATTAATGCTCTAGCAGAGAACAATGCTCATGTTCCATTTCGTGATTCAAAGCTTACCAGGATGCTTCGAGATTCTTTTGGAGGCACAGCTAGGACTTCATTGATTGTGACTATTGGCCCATCTCCACGTCATCGAGGAGAGACTTCAAGTACCATATTGTTTGGCCAAAGGgCTATGAAAGTTGAGAATATgctgaaaataaaagaggaatttgattataaaagcTTGTCTCGAAAGCTTGAGGTACAATTAGATAAGCTTATTGCAGAAAATGAAAGGCAGCAGAAAGCTTTTGAGGATGAAGTTGAAAAAGTAAATTTGGAGGCACAATGTCGTATTGCTGAGGTTGAGAGGAACTTTGCAGATGCATTAGAGAAAGAGAGACTGAAATGCCAGATGGAGTACATGGAATTGGTAAAGGAGCTGGAGCAGAAGTTGGTGTTGAATCAAGAAAGACATGGCTGCAATAGTTTTGTGGCTGATAATGGAGAGGGGCCTGCATCATCTTCTGCAGATGAAGTTGCTGAGGTCAAAATGCTGCTTGAAACTGAAAGAAATAGGAGAAAGGCAGCTGACGAGGAGGTAGAATATCTAAAAAGTCAGCTGGGGAAACATATGCAAGCAGAGGCAGGAGATGTGGAGATTATAAAGCTTCGCAACATCCTGGAGGATGAGGCTAATCAGAAAAAAAGACTTgaagaagaaataataatactaaggAGTCAATTATTGCAATTGAACTTTGAAGCTGACCAGATGAGAAGGTGTTTGGAAAATGGAAGCTCTGGGAGCACATTTTCTGCCACGGATTCCTCCATGACTCAAGTTAGGCATTCGCAATTCAAGGACACTGGGAATGGTCAGAAGTCATCTGTTGCTACACTCTTTGAGCAAGTTGGATTGCAAAAGATTTTGTCATTGCTGGAGTCAGATGATGCCAATGTACGAATTCATGCTGTGAAAGTGGTGGCCAACCTAGCAGCTGAGGAGGCTAATCAGAAGAGAATTGTTGAAGCTGGTGGTCTTACTTCCTTGCTGATGCTTCTTCGAAGATATGAGGATGAAACTGTTCGCAGAGTAGCTGCTGGGGCAATTGCCAATCTTGCTATGAATGAAGCAAATCAAGAACTTATTATGGCTGAAGGAGGAATTACTCTGTTATCAATGACTGCATCTGATGCTGAAGATCCACAAACTCTTCGAATGGTTGCTGGGGCAATTGCTAACCTATGTGGAAATgATCGAATATTGATGACTCTGAGATCTCAGGGAGGTATAAAGGCTTTACTGGGAATTGTAAGATGTGGACATCCCGATGTTCTTTCCCAAGTTGCACGAGGAATTGCTAACTTTGCAAAATGCGAGTCTCGAGCATCTAATCAAGGGATAAAAAGTGGTAGATCTTTTTTAATAGAAGATGGTGCACTTCCGTGGATAGTTCAAAATGCTAATAATGAAGCAGCACCAATCAGGCGTCACATTGAGCTTGCACTATGCCACTTGGCACAGCATGAAGTGAATGCAAAAGACTTGATTAGTGGAGGTGCTCTTTGGGAGCTTGTCCGGATATCACGAGATTGTTCACGAGAAGACATACGGAATCTTGCTCGCCGGACTCTCAGTTCTGTCTCAACATTCAAATCTGAATTGCGGCGATTGCGTATAGATTATTGA 1899 0.4107 MVHIKRSVLESEDIVSSQNGDASHLTKPSKPLVRKSKLVVVDLAGSERVHKSGSEGHMLEEAKSINLSLSSLGKCINALAENNAHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEVQLDKLIAENERQQKAFEDEVEKVNLEAQCRIAEVERNFADALEKERLKCQMEYMELVKELEQKLVLNQERHGCNSFVADNGEGPASSSADEVAEVKMLLETERNRRKAADEEVEYLKSQLGKHMQAEAGDVEIIKLRNILEDEANQKKRLEEEIIILRSQLLQLNFEADQMRRCLENGSSGSTFSATDSSMTQVRHSQFKDTGNGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVEAGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTASDAEDPQTLRMVAGAIANLCGNDRILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQGIKSGRSFLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAKDLISGGALWELVRISRDCSREDIRNLARRTLSSVSTFKSELRRLRIDY 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0879 632 Pfam Armadillo/beta-catenin-like repeat 407 444 IPR000225 GO:0005515
Ssu3g0879 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 374 416 IPR000225 GO:0005515
Ssu3g0879 632 SMART arm_5 446 487 IPR000225 GO:0005515
Ssu3g0879 632 SMART arm_5 578 620 IPR000225 GO:0005515
Ssu3g0879 632 SMART arm_5 364 403 IPR000225 GO:0005515
Ssu3g0879 632 SMART arm_5 488 528 IPR000225 GO:0005515
Ssu3g0879 632 SMART arm_5 404 445 IPR000225 GO:0005515
Ssu3g0879 632 Coils Coil 249 276 - -
Ssu3g0879 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 458 IPR000225 GO:0005515
Ssu3g0879 632 Gene3D - 465 630 IPR011989 -
Ssu3g0879 632 Gene3D Kinesin motor domain 4 181 IPR036961 -
Ssu3g0879 632 SUPERFAMILY ARM repeat 368 625 IPR016024 -
Ssu3g0879 632 PANTHER KINESIN-LIKE PROTEIN 1 624 IPR033291 GO:0008017|GO:0032886|GO:0048364
Ssu3g0879 632 Pfam Kinesin motor domain 27 136 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g0879 632 SMART kinesin_4 2 144 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g0879 632 PANTHER KINESIN-RELATED 1 624 IPR027640 GO:0003777|GO:0007018
Ssu3g0879 632 ProSitePatterns Kinesin motor domain signature. 36 47 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu3g0879 632 Coils Coil 152 216 - -
Ssu3g0879 632 Coils Coil 290 324 - -
Ssu3g0879 632 Gene3D - 356 464 IPR011989 -
Ssu3g0879 632 PRINTS Kinesin heavy chain signature 37 55 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g0879 632 PRINTS Kinesin heavy chain signature 86 107 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g0879 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 171 IPR027417 -
Ssu3g0879 632 ProSiteProfiles Kinesin motor domain profile. 1 136 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0879 Ssu-Chr3 21191248 21202606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0879 35 183 Calmodulin-binding Proteins AT5G65930 41.611 3.84e-24 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0879 3 21191248 21202606 Ssu3g0879 3 21191248 21202606 ECH