Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0872 ATGGCTTCTTGCGAAATTGCATTAGGTAACTCTGGAGCAATGCAAGAAGGggacaaaaaaaTTTCACGAGGCACAGAAGCAGTTGGCCGTCTCTTGTTATCGACAGCTACTATGGCGGCTAATCTCCCTGCAACAAAGTCCACCACGACGACGCTGTCTCAGGAGAAACGACACCGTTCGATCTTCGAAGTGCCACCGAACTTCTTCGACTCTTGTCGCCTTCTCCCTTCCCCTCACTCATCCGTTCCCGACCACCACGGCTTAGACCAAACCCTCGAACCATCCTCAAACGACGTCGTCGCTGTCGATGCCCCTCAAAACGCCGTCGTTTCCGCGCCCAGGTGGACCTGCAATACCTGCAAGACTCAATTCGATTCCCTTCAAGACCAGCGTTCCCATTTCAAATCCGACATCCATCGATTCAACGTGAAGCTGACAATTGCTGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGAATTTGTCAAAGACTATGATGTGTCGAGTATATCGGGATCAGAAAGTGATGATGATAGTGAAATTGAGTCTCAGAGTCAAAATGTGGTGCGAGATAAATCTGGTGaaagttttaaacaaaaactaTTCTTCTGTCTTCAGACAGGGCAGAGAGTTTCTCTCTGGAAGTGCTTGATTATGAATGTGACAGAAAATGTATTGTATGAGAATGAAAAAGTGGAGAATGAAGTGGTTGACAAGTTGAAATCTCTGTCTGTTGAACCCAGAGATAATACCCATTTGAGGATTGTTCTGCTTGCGTCTGGTGGGCACTTTGCAGGTTGTGTCTTTGATGGTGATGCTGTTGTGGCTCACAAGACATTTCACAGATATGTTGTAAGGGCCAAGGCAGGAAAAAAACAATCATCTAAAGATGCTTCTGGCAGGGCTGCACATTCTGCTGGGGCTTCACTTCGTCGTTATAACGAACTTGCATTAAAGAAGGAAGTTCAAGAACTGCTCACTGCTTGGAAACCTTATTTTGATGCATCCAATTGCATTTTTATACATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAGATCATATTTCACCAATCAGCAGGGTGCTATTAGAAATATTGCTTTGAGTGTTCGGAGGCCTACTTTCAGGGAAGCAAAGCGTGTATATAGCCAGTTGACCCAGGTAACCTATGAAGCAGATGAGAAGGAAGTTTTACAAAGCAACAGAGAGGATTTGGTATCGATTCATGTTTCCACAATAAATGGCAGTCCAACCGCCAGCAAGGGGGACGTGGCTGAGTTGGATGACACAGATAAAGCTGAAGCTTGTTCAAGTAAACAAAATGATAAACTCCCCATTTTGAGTAATGGAGAAAGTGATAATGAACTATTCAGTAAATCAACTCCTTTGCATCAAGCAGCACAATCTGGTGACTCTCTAAAGGTTTTGGAGCTCCTGGAACAGGGCCTGGATCCTTGCATCAAAGATGAAAGGGAGCGGACCCCATATATGTTGGCACATGACAAAGAAGTGAGGAATACTTTCAGAAGGTTTATGGCATCAAATCTTGACAAGTGGGATTGGCATGCTGCAAAAGTGCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCTAAagcaaaagaattaaagaaattgcgtaaagcaaaagaaaagaaggctCAGGCTGAAGCTGCCTTGCCTAAGAATGATTCCAAAACTATACAGAAGCAAGTAACTGCTCCAGCATTTATTAAAGGACAGTCTCAACTAAGAAGTGGGGTGCAATTATCTAAAGAGGACGAAATAAGAATGTCACACGCTgctgaaagagaaaagagagcaGCTGCTGCAGAGAGGAGAATAGCTGCCCTCAAAATTCAAGCTACTGGTGCAACCACTGCTACTGCACCAAGCATGTCAGAACCTAAAAGTGGATTAGCTGGTGACATTTACTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCGTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAGGGAGATCCTAGAAGATCAATGA 2109 0.4225 MASCEIALGNSGAMQEGDKKISRGTEAVGRLLLSTATMAANLPATKSTTTTLSQEKRHRSIFEVPPNFFDSCRLLPSPHSSVPDHHGLDQTLEPSSNDVVAVDAPQNAVVSAPRWTCNTCKTQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSEFVKDYDVSSISGSESDDDSEIESQSQNVVRDKSGESFKQKLFFCLQTGQRVSLWKCLIMNVTENVLYENEKVENEVVDKLKSLSVEPRDNTHLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRYNELALKKEVQELLTAWKPYFDASNCIFIHAPSSSRQLLYDGERSYFTNQQGAIRNIALSVRRPTFREAKRVYSQLTQVTYEADEKEVLQSNREDLVSIHVSTINGSPTASKGDVAELDDTDKAEACSSKQNDKLPILSNGESDNELFSKSTPLHQAAQSGDSLKVLELLEQGLDPCIKDERERTPYMLAHDKEVRNTFRRFMASNLDKWDWHAAKVPSALTKEMEESQAAKQAEKDAKRKAKAKELKKLRKAKEKKAQAEAALPKNDSKTIQKQVTAPAFIKGQSQLRSGVQLSKEDEIRMSHAAEREKRAAAAERRIAALKIQATGATTATAPSMSEPKSGLAGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDQ 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0872 702 ProSitePatterns Zinc finger C2H2 type domain signature. 117 139 IPR013087 -
Ssu3g0872 702 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g0872 702 ProSiteProfiles Ankyrin repeat region circular profile. 465 497 - -
Ssu3g0872 702 Coils Coil 541 579 - -
Ssu3g0872 702 MobiDBLite consensus disorder prediction 431 445 - -
Ssu3g0872 702 Coils Coil 621 641 - -
Ssu3g0872 702 MobiDBLite consensus disorder prediction 448 471 - -
Ssu3g0872 702 ProSiteProfiles Ankyrin repeat profile. 465 497 IPR002110 GO:0005515
Ssu3g0872 702 SUPERFAMILY beta-beta-alpha zinc fingers 113 146 IPR036236 -
Ssu3g0872 702 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 53 698 - -
Ssu3g0872 702 MobiDBLite consensus disorder prediction 422 471 - -
Ssu3g0872 702 Pfam Vms1-associating treble clef domain 665 698 IPR041540 -
Ssu3g0872 702 MobiDBLite consensus disorder prediction 172 192 - -
Ssu3g0872 702 Pfam Bacteroidetes VLRF1 release factor 259 397 IPR041175 -
Ssu3g0872 702 SUPERFAMILY Ankyrin repeat 466 520 IPR036770 -
Ssu3g0872 702 Gene3D - 430 554 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0872 56 647 C2H2 Transcription Factor Family AT1G01930 54.023 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0872 K26089 - gmx:100808912 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0872 3 21112840 21121710 Ssu3g0872 3 21112840 21121710 ECH