Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0870 ATGCAGTCGTGTCGTGAGAAGATATCCAAATGGCAGAGTCAAGTTTCTAAGAGATTGAAGAGTCTCGCTAGACGAGCAGATCAGGTGAATAAAGTTGGAAGCCCGAAAACTAGTCAAGAGTCTGGTGCAAATTATGATGCCAAACTGGTTGAAATGATTAACGCTACCATAGTGGATAGAAGTCCTTCTGTTAAATGGGAAGATGTTGCTGGGCTTGAAAAGGCAAAGCAAACTTTAATGGAGATGATTATTTTGCCAACTAAGAGAAGAGACTTGTTTACGGGTCTTCGACGGCCAGCCAGAGGTGAAAAGCTTGTCCGTACACTATTCAAGGCAGCTGTATCCAGACAGCCATCTGTAATTTTCGTTGATGAGATTGATAGTATAATGTCAACAAGGTTCGCAAATGAGCATGAGACCAGCAGACGATTAAAATCCGAATTTCTTATCCACTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCAACAAATAAGCCACAAGAATTGGATGATGCTTTTCTTGGGAGAGTGGTAAAGAGAATATACGTACCTTCACAACATGAAAATGCTCGGAAGCTTCTGCTAAAACAAAAACTCAAGGATCAAGCATTCTCCTTACCTAGTGGAGATCTAGAGAGGCTTGTCAAAGAGACAGAAGGATATTCTGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGTTGGGTGCTGACATTCTTACTGTTGAGGCTAGTCACGCATGCTATTTGAAATTACTGTGTCTTTAG 804 0.4154 MQSCREKISKWQSQVSKRLKSLARRADQVNKVGSPKTSQESGANYDAKLVEMINATIVDRSPSVKWEDVAGLEKAKQTLMEMIILPTKRRDLFTGLRRPARGEKLVRTLFKAAVSRQPSVIFVDEIDSIMSTRFANEHETSRRLKSEFLIHFDGVTSNPDDIVIVIGATNKPQELDDAFLGRVVKRIYVPSQHENARKLLLKQKLKDQAFSLPSGDLERLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVEASHACYLKLLCL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0870 267 Pfam ATPase family associated with various cellular activities (AAA) 101 190 IPR003959 GO:0005524|GO:0016887
Ssu3g0870 267 Gene3D - 192 257 - -
Ssu3g0870 267 CDD AAA 91 191 - -
Ssu3g0870 267 Pfam AAA+ lid domain 216 258 IPR041569 -
Ssu3g0870 267 ProSitePatterns AAA-protein family signature. 163 182 IPR003960 GO:0005524|GO:0016887
Ssu3g0870 267 Gene3D - 102 191 IPR027417 -
Ssu3g0870 267 Gene3D - 43 101 IPR027417 -
Ssu3g0870 267 PANTHER AAA DOMAIN-CONTAINING 14 102 - -
Ssu3g0870 267 PANTHER AAA DOMAIN-CONTAINING 101 258 - -
Ssu3g0870 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 253 IPR027417 -
Ssu3g0870 267 PANTHER SPASTIN 14 102 - -
Ssu3g0870 267 PANTHER SPASTIN 101 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0870 Ssu-Chr3 21085781 21092071 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0870 62 246 Calmodulin-binding Proteins AT3G56690 32.627 9.54e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0870 K13254 - gmx:100780946 378.637