Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0868 ATGAAAATTGAGAATCGCGTGCCAGGAATGAGTTTCTTGCAGGGAATCATTGATTCCTTTAACTCCATCTTTGTACCCTATAACAATTATACTAATaccaattcttcttcttcttcaacgGATCGAATGGAAGCTTCTCCTCCTCCTTCGGCTTCGAACGAGCGCGTGGCTTACAAGCTGAAAGGTTACTTCGATTTGGCGACGCAAGAGATCGCGAAGGGCGTTAGAGCAGAGGAATGGGGTTTGGTCGACGACGCGCTTCTTCACTACAGGAACGCGCAATCGATCCTCGTCGAAGCCAATTCAACTCCCGTTCCTTCCTATATCACTTCCAGTGAGCAACAGAAGGTGCAGTCGTATCGTGAGAAGATATCCAAGTGGCAGAGTCAAGTTTCTGAGAGATTGCAGACTCTCACTAGACGAGCTGGTAGCTCGTCTGCCAATCAGAGCACCTCAAACCTTGCACAAACTGCTGCAGTTCCGATTAAGCCATTGAGTACtagaaaaaatgtgttacaAAAGCCCCCTCAAAGAACAGGTCAGGTGAACAAAGTTGGAAGCCCAAAATCTGGTCAAGCATCTGGTGTAAATTATGATGCTAAACTGGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAAATGGGAAGATGTTGCTGGGCTCGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTATTCACTGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCGAAAGCAGTGGCTTCAGAATCACAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAAGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCACATGAGAATGATGCAAGCAGACGATTAAAATCCGAATTTCTAATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATACTGTGATTGTAATTGGTGCAACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATATGTACCTTTACCAGATGAAAATGTTCGGAAGCTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAAAGGCTTGTAAAAGAGACAGAAGGATATTCTGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTGCTGACATTCTTACCGTTAAGGCCAATCAGGTAAGAGGACTGAGGTACGATGATTTTAAGAAGGCAATGGCTATCATCAGGCCAAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGCTGGAATGAGGAATTTGGCTCTAATTGA 1476 0.4248 MKIENRVPGMSFLQGIIDSFNSIFVPYNNYTNTNSSSSSTDRMEASPPPSASNERVAYKLKGYFDLATQEIAKGVRAEEWGLVDDALLHYRNAQSILVEANSTPVPSYITSSEQQKVQSYREKISKWQSQVSERLQTLTRRAGSSSANQSTSNLAQTAAVPIKPLSTRKNVLQKPPQRTGQVNKVGSPKSGQASGVNYDAKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGESEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLAHENDASRRLKSEFLIQFDGVTSNPDDTVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYDDFKKAMAIIRPSLNKSKWEELERWNEEFGSN 491
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0868 491 CDD AAA 241 386 - -
Ssu3g0868 491 MobiDBLite consensus disorder prediction 169 193 - -
Ssu3g0868 491 SMART AAA_5 252 388 IPR003593 -
Ssu3g0868 491 Pfam AAA+ lid domain 411 442 IPR041569 -
Ssu3g0868 491 Gene3D - 387 469 - -
Ssu3g0868 491 Pfam ATPase family associated with various cellular activities (AAA) 256 386 IPR003959 GO:0005524|GO:0016887
Ssu3g0868 491 MobiDBLite consensus disorder prediction 31 47 - -
Ssu3g0868 491 MobiDBLite consensus disorder prediction 31 52 - -
Ssu3g0868 491 MobiDBLite consensus disorder prediction 170 193 - -
Ssu3g0868 491 PANTHER BNAC04G50250D PROTEIN 9 491 - -
Ssu3g0868 491 SMART smart 60 137 IPR007330 -
Ssu3g0868 491 ProSitePatterns AAA-protein family signature. 358 377 IPR003960 GO:0005524|GO:0016887
Ssu3g0868 491 CDD MIT_spastin 60 138 - -
Ssu3g0868 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 488 IPR027417 -
Ssu3g0868 491 Gene3D - 215 485 IPR027417 -
Ssu3g0868 491 PANTHER AAA DOMAIN-CONTAINING 9 491 - -
Ssu3g0868 491 Gene3D - 52 142 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu3g0868 Ssu-Chr3 21073958 21082596 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0868 215 441 Calmodulin-binding Proteins AT3G56690 43.644 1.89e-48 177
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0868 K13254 - gmx:100780946 870.152