Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0856 ATGGCGCCACCCATCGCGGCGCACCTCACGGCCTTCGCTCTCTTCGTCACCGTCGCCGCTGCCGCAACCGAATACCACAACCACACGGTCGGCGCAGCCGCCGGGTGGTTCTTCAACTCCACCACCGACACACCCGCCGCGAACTACTCTTCTTGGGCTTCAACTCAAACATTCGACCTTGGCGATTATCTCAttttcaacaCGAACTCGAACCAAACGGTGGTTCAGACTTACAACAAGACTACCTATCTGAACTGCACCGCCGACGAATCCGACAACGGCACCTTCGTGTACGACGGCGGAAGCGGTCGTTTCGGCGAGGCGTTGACCATCGCCGTGCCGTTGACCATAGTTGGACCGAACTACTTCTTCTCCGACGCCGGCGACGGCGTCCAGTGCCAGCGCGGCTTGGCCTTCGAGATCGACGTCCAGCGAGGCCTCGGCTTGCCGCCGAGTCTCAACcagccgccgccgccgccgtaCCGGGAGCCGCCGGGTCCCGACTCCGCTCAGTCACCGCCGATCGCGGTGGCGCAGTCTCCCAGCGGCGGCGCTTTCGCGAGCCGCGCTGACGTGCGCATGGCGGTTCTGGGCTTCGCTGCGGCGTTATTGCTGATGCAGCAGTTTCAGTGA 633 0.6051 MAPPIAAHLTAFALFVTVAAAATEYHNHTVGAAAGWFFNSTTDTPAANYSSWASTQTFDLGDYLIFNTNSNQTVVQTYNKTTYLNCTADESDNGTFVYDGGSGRFGEALTIAVPLTIVGPNYFFSDAGDGVQCQRGLAFEIDVQRGLGLPPSLNQPPPPPYREPPGPDSAQSPPIAVAQSPSGGAFASRADVRMAVLGFAAALLLMQQFQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0856 210 MobiDBLite consensus disorder prediction 151 171 - -
Ssu3g0856 210 ProSiteProfiles Phytocyanin domain profile. 26 145 IPR003245 GO:0009055
Ssu3g0856 210 CDD Phytocyanin 26 143 - -
Ssu3g0856 210 PANTHER BLUE COPPER PROTEIN 14 202 IPR039391 GO:0009055
Ssu3g0856 210 Gene3D - 24 145 IPR008972 -
Ssu3g0856 210 PANTHER OS12G0454600 PROTEIN 14 202 - -
Ssu3g0856 210 Pfam Plastocyanin-like domain 41 136 IPR003245 GO:0009055
Ssu3g0856 210 MobiDBLite consensus disorder prediction 148 182 - -
Ssu3g0856 210 SUPERFAMILY Cupredoxins 26 143 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0856 Ssu-Chr3 20842060 20842964 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0856 1 178 Phytocyanin Superfamily AT1G08500 38.043 1.96e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0856 - - ccaj:109802964 339.732