Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0850 atggGTAGAGGGAGGGTTGTGCTGAAGAAGATAGAGAACAAAGTGAACCGCCAAGTTACTTTCTCAAAGAGAAGGAACGGTTTGCTCAAGAAAGCCAAAGAACTCTCAGTGCTGTGTGATGCTGAGGTTGCCCTTGTGATTTTCTCAAGTCGTGGGAAGCTCTCCTCCTTTCCAAATGATGGTGATAGtaTTATCAAAACCTATGAACGATACCGAAGGTACTCTTTATATCAAGCTGACAATGTTGAACCTGAAACTCAGAGTTGGTACCAAGAAGTGTCAAAGCTAAAAGCAAAGTATGAGGCTCTACAAATGATACAAAGGCATTTGCTTGGGGAAGATCTTGGACCACTGAACATAAAAGAGCTGCAAAATCTTGAGAAACAACTTGAAAGAGCTTTATCACAAACTAGGCAGAGGAAGacacaaattataattgaacAAATGGAAGAGCTTCACAGAAAAGAACGCCATCTTGGTGACCTGAATAAGCAACTTAGACTCAAGCTTGAATCTTATGGatttaatctcaaagctattGAAAGTTTGTGGAGCACTTCTACTGCTGCTGGAGATGGCAGCTTTCCTTTGCAGTTGCAGCCAACCGAAACCAACCCTATGGATTTACAAGCTGAATCTTTCTTGCAAATAGGGTACAATCACGAGGTTGAAGCTGAGCCATCTATTATTCCAAAGAGCATGGCTAATGAGATTAATTTCCAAGGATGGTTCCTTTGA 738 0.397 MGRGRVVLKKIENKVNRQVTFSKRRNGLLKKAKELSVLCDAEVALVIFSSRGKLSSFPNDGDSIIKTYERYRRYSLYQADNVEPETQSWYQEVSKLKAKYEALQMIQRHLLGEDLGPLNIKELQNLEKQLERALSQTRQRKTQIIIEQMEELHRKERHLGDLNKQLRLKLESYGFNLKAIESLWSTSTAAGDGSFPLQLQPTETNPMDLQAESFLQIGYNHEVEAEPSIIPKSMANEINFQGWFL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0850 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu3g0850 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu3g0850 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu3g0850 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu3g0850 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu3g0850 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu3g0850 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 231 - -
Ssu3g0850 245 Coils Coil 120 143 - -
Ssu3g0850 245 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu3g0850 245 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu3g0850 245 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Ssu3g0850 245 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Ssu3g0850 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Ssu3g0850 245 PANTHER MADS BOX PROTEIN 1 231 - -
Ssu3g0850 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0850 Ssu-Chr3 20753573 20759069 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0850 1 245 MADS-box Gene Family AT2G45650 57.812 7.45e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu3g0850 K-box 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0850 K09264 - gmx:100820061 333.569