Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0848 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACCTTCTCAAAGCGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATTTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCAGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGTAAACTCTTGGGAGAAGGTTTGGGGTCATGCTCCTTAGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAGGTTTACAAGGAACAAATTGAGCaactaaaagaaaagGAGAAAGCCCTATGTGCTGAAAATGCCAGGCTGTGTGAGCAGTATGGTATGCAGCCACAACCAGCAACAAGGGATCCAAGAGAAAATCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACCCAGGTCTAGTTGA 630 0.4333 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKEQIEQLKEKEKALCAENARLCEQYGMQPQPATRDPRENQPYAESSPSSEVETELFIGLPRSS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0848 209 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Ssu3g0848 209 Coils Coil 121 170 - -
Ssu3g0848 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu3g0848 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu3g0848 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu3g0848 209 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Ssu3g0848 209 PANTHER MADS-BOX PROTEIN SOC1 1 206 - -
Ssu3g0848 209 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Ssu3g0848 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu3g0848 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu3g0848 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu3g0848 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu3g0848 209 MobiDBLite consensus disorder prediction 179 198 - -
Ssu3g0848 209 PANTHER MADS BOX PROTEIN 1 206 - -
Ssu3g0848 209 MobiDBLite consensus disorder prediction 172 209 - -
Ssu3g0848 209 Coils Coil 73 107 - -
Ssu3g0848 209 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu3g0848 209 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0848 Ssu-Chr3 20712163 20731081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0848 1 158 MADS-box Gene Family AT2G45660 78.481 6.33e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu3g0848 K-box 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0848 - - gmx:100037477 372.089