Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0842 ATGCCTCGTGGGACGCTTGAAGTTATTCTGATCAGCGCAAAAGACCTTCATGACAGTGATTTTTTCGGGAAAATGGATCCTTATGTGATTCTCAGCTATCGCACACAGGAGCACAGAAGCAGTGTGGCTAAAGGTGCAGGATCTAAACCCCAGTGGAATGAAAGCTTCCTTTTCACAGTTTCTGACAGTGTCTCTGAACTTAATCTGAGGCTAATGGACCAGGATTTGTTAACTAGTGATGATTTCCTTGGCGAGGCAAAAATTGATCTGGAACCAGTGTTTGCTGCGGCGGGGACCATCCCAGAAACTTCTTACAATGTTGTGAAGGACCAGAAGTACTGTGGGGAGGTTAAGGTGGCGCTCGCCTTCAATCCTGAGGTCACTTCTTACAGCATTGCGGCAGATTCCACGGCAAGAAACTTAAGAAGGCATGTTGGTTTTCTGGTTTGCAGTAGTGTGGTCTTTGTGGTTACATAA 477 0.4612 MPRGTLEVILISAKDLHDSDFFGKMDPYVILSYRTQEHRSSVAKGAGSKPQWNESFLFTVSDSVSELNLRLMDQDLLTSDDFLGEAKIDLEPVFAAAGTIPETSYNVVKDQKYCGEVKVALAFNPEVTSYSIAADSTARNLRRHVGFLVCSSVVFVVT 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0842 158 PANTHER C2 DOMAIN-CONTAINING 1 127 - -
Ssu3g0842 158 Gene3D C2 domain 2 126 IPR035892 -
Ssu3g0842 158 PANTHER ELICITOR-RESPONSIVE-LIKE PROTEIN 1 127 - -
Ssu3g0842 158 SMART C2_3c 5 102 IPR000008 -
Ssu3g0842 158 Pfam C2 domain 4 95 IPR000008 -
Ssu3g0842 158 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 125 IPR035892 -
Ssu3g0842 158 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0842 Ssu-Chr3 20546995 20549714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0842 4 97 C2H2 Transcription Factor Family AT4G21160 31.915 4.43e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0842 - - gmx:100814819 229.565