Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0820 ATGAAGCTGCGGTGGGGTGAGCTGGAGGAGGAATATGGTGAGGATCTAGACTTCTTTCTACTGTCGTGGCAAGTGATAGGGCTAGATGAGAAAGACATAAGGAAGGTGATCGAGTACAAGTTCGACGAGGATGGCAACAAGGTCAAGATCACCACCACCATGCACACCCGCAAGCTCGCCAGCGCATGTCTTAGCAAACACGCCGTCAAGCGCCGCTCTTGGCCCAAGTTCAGCAATGCCATCCACAAGAACGTCTATAGCCGCCTCACCATGgaagaagcaGAAACCGCGGAGGAAGATTATGAGAAGAAAGTAGTTTCGGAGACGCTTGCTGCAATCATCCTTGGAGGGAAAAACGAAGGCAATGTTCTAGCGTTTACGATCCGTGGGATTATAGGGATGCAGAAGGCCGGAGTTGCTAAATGTGTTTGCGAAGCTGCGGAAGTGAAAAGTGGCTTTGATGTGGTGTCGTGGATTGATGGTTTCCAGCTGCAGGAGTATTATGCTGAGTCTGTGGTGGATCGTGTGAACCACCTATTGGAGGAGGCGAAGAAGAAGGACTCTGGTGTGGGAAAAGGATTCTTTGTGGTTCTAGATGATTTTCACAATGAGAACCACGAGGAATGGCTCAAGTTGGCGGTGAAACTGAAGGAGGTAGCACGCACATCATCTGGAGGTGCTGTATTACTTGTAACTACCCGGAGTAAAGCCGTCGTCAAATTTGTCACTGATTCATTTGGTTATGATTTGGGTCGTGAATGTATGGAGGAATTCCTCCGCAGGTCAATATTCAGAGttaatgaaaatagagaaatcaGCATCGTCAAATGGCGTGCCCTGTCACCACCAGTTATGGTTGGCCACGACAGCGTGTCTATGAAGAAGAACAAGGGCATCACTGACAACGATGTTCGCCTTGGTTGCAAAGACTTGAAGTCCATCGAAGGTTGGAAACATCTCACCTCACTTGAGAAACTGCATATTTCTAACTGTACTGGTATTGATCTACCGGGGGAGGAATGGGAGGGTTTGGAAGCACTACAGGATCTAATCATAGAGGATATGCCAAAATTAGAGTATCTTCCAGAACGAATAAAACGCCTTGCCTCTAAGTCTCTCACTACTCTAGAGATCGAGAGTTGTCCTGAGTTGAAGACTATGCTGGATTTTGGCGAAGACCTCTACTCcgttacatttattttaattgaagattGTCCTAAGTTAGCTTCATTGCCTAACAGCTTCAAAGCCAACCGCTTTTTCACACCATTGAGAACTTAA 1281 0.4567 MKLRWGELEEEYGEDLDFFLLSWQVIGLDEKDIRKVIEYKFDEDGNKVKITTTMHTRKLASACLSKHAVKRRSWPKFSNAIHKNVYSRLTMEEAETAEEDYEKKVVSETLAAIILGGKNEGNVLAFTIRGIIGMQKAGVAKCVCEAAEVKSGFDVVSWIDGFQLQEYYAESVVDRVNHLLEEAKKKDSGVGKGFFVVLDDFHNENHEEWLKLAVKLKEVARTSSGGAVLLVTTRSKAVVKFVTDSFGYDLGRECMEEFLRRSIFRVNENREISIVKWRALSPPVMVGHDSVSMKKNKGITDNDVRLGCKDLKSIEGWKHLTSLEKLHISNCTGIDLPGEEWEGLEALQDLIIEDMPKLEYLPERIKRLASKSLTTLEIESCPELKTMLDFGEDLYSVTFILIEDCPKLASLPNSFKANRFFTPLRT 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0820 426 Pfam Eukaryotic translation initiation factor 3 subunit G 25 84 IPR024675 -
Ssu3g0820 426 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 3 96 - -
Ssu3g0820 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 265 IPR027417 -
Ssu3g0820 426 Gene3D - 81 245 IPR027417 -
Ssu3g0820 426 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 3 96 - -
Ssu3g0820 426 SUPERFAMILY L domain-like 309 413 - -
Ssu3g0820 426 Gene3D Ribonuclease Inhibitor 302 420 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0820 Ssu-Chr3 19668327 19677531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0820 2 95 Eukaryotic Initiation Factors Gene Family AT3G11400 54.255 1.67e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0820 K03248 - gmx:106797033 166.777