Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0815 ATGCAAAACTCAAACCCTTCTTCCCCTTCCTCTCCGCCGCCCGTGGACACCGTGCCGTTCCTCCACCGGAGCCGCCTCCTCCTCCGCCGCTGGCCGCCGCCGCTGCGGAGCGCGGCGCTGTTCTTCCGGCGTGCGAGCGGGCGGCGCATGATGCTGCGGGAGCCGTCGGTGCGCGTGCGGGAGGCGGCGGCGGTGGAGGTGGAGGAGCGGCAGAGCGAGTGGGCGTACTCGGCGCCGGTGGTGGCGCTGGACGTGCTGTGGAACGCGGCGTTCCTCGCGATCGGGGCCACGGTGCTGGCGCTAAGCGCGAAGGAGGAGCCGTGCGTGCCTCTGAGGGCGTGGGTTGTGGGGTACTTGTTGCAGGGCGCGTTTCACTCTCTCTGTGTCGTTGTCGAGTTCAGAaggagaaggaggaggaggaccCAGTTGGGTGTGGTGGACCACACTGAATGGAGCTTCAGTTCCGATACTGATGAGGAGTTTTATGCTCCGGAGCAGGTTCTTGAGGGCGAGGGAAACGGCATCACAAAACACATAGAGTCTGCAAATACAATGCTTTCATTCATATGGTGGATTGTTGGGTTCTACTGGGTAACTGCTGGTGGCCAGAGTTTGACAAGGGATTCACCTCTGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTTGTTATTGTACTGATCTGTGTTGCTATTGCATGTCTTATTGGTATTGCTGTTTGCTGTTGTCTGCCGTGCATACTTGCTATTCTGTATGTAGTGGCAGATCAGGAAGGGGCAACGAAGGAAGAGATTGACCAGTTACCAAAATATAAGTTCAGAATAATAAAGGAATTTAAGAAAGGTGATATTGAAGAATTTTCCAGAGGAATAATGACTGAATCTGACTGTGAGACAGCCACCGAACATGTTATTTCCTTAGAAGATGCAGAATGTTGTATCTGCCTTTCTGCCTATGATGATGGTGCTGAACTCAGAGAACTTCCTTGCAATCACCATTTTCACTGCACATGCATTGATAAATGGCTGCTAATCAATGCTACCTGCCCTCTCTGCAAGTTTAACATTTTGAGCACTGGCAACCACCATCAAGAAGTTTGA 1104 0.519 MQNSNPSSPSSPPPVDTVPFLHRSRLLLRRWPPPLRSAALFFRRASGRRMMLREPSVRVREAAAVEVEERQSEWAYSAPVVALDVLWNAAFLAIGATVLALSAKEEPCVPLRAWVVGYLLQGAFHSLCVVVEFRRRRRRRTQLGVVDHTEWSFSSDTDEEFYAPEQVLEGEGNGITKHIESANTMLSFIWWIVGFYWVTAGGQSLTRDSPLLYWLCITFLAFDVVIVLICVAIACLIGIAVCCCLPCILAILYVVADQEGATKEEIDQLPKYKFRIIKEFKKGDIEEFSRGIMTESDCETATEHVISLEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTGNHHQEV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0815 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 367 - -
Ssu3g0815 367 SMART ring_2 313 353 IPR001841 -
Ssu3g0815 367 SUPERFAMILY RING/U-box 299 359 - -
Ssu3g0815 367 CDD RING-H2_RNF111_like 312 356 - -
Ssu3g0815 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 360 IPR013083 -
Ssu3g0815 367 PANTHER TARGET OF ERK KINASE MPK-1 7 367 - -
Ssu3g0815 367 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Ssu3g0815 367 Pfam Ring finger domain 312 354 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0815 Ssu-Chr3 19525334 19531349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0815 7 365 C3H Transcription Factor Family AT1G68070 48.219 2.06e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0815 - - gmx:100795425 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0815 3 19525334 19531349 Ssu3g0815 3 19525334 19531349 ECH