Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0812 ATGAATGTGATGCGAAGGTTGAAAAGCATTGCTTCTGGGAGGACTTCCATTTCATCAGATCCTGGAGGGGATTGTACCACAAAAAGAGCTAAGTTTGATCAAGAGACTGAAGGAAAGGTCAATGGAGAAACATATCCTAATGAGAGATGTGGAAAAGATCAGGAGCAGCACGTAGATGCTTCAAAAGAAAGTGCTATTGGCACATTTAATTCCAATGTTTCTACAATGGCTAGAACTGAGAAGTCAGGTTATGATCAGCTTCcaaaagaattaaatgaaatgaaaattgaagaCGACAAACGCAAAAACAACAACGAGAAGGATATGGAAGCTACTGTTGTGAATGGTAATGGAACAGAGACAGGTCAAATAATTACAACTTCTATTGGTAGTCGAGATGGACAATCAAAGCAGGCAATCTCATACATGGCAGAACGTGTGGTTGGCACTGGTTCTTTGGCTAAGTGCCTTGAATCTGGTGAAGCAGTTGCAATTAAAAAAGTGTTGCAAGACAAGAGATATAAGAATAGGGAATTGCAGGTTATGCGTATGCTTGACCATACTAATGTTCTCAGACTAAAGCACTGTTTCTATTCAGCAGCCGAGAAAGATGAGCTGTACCTTAACCTAGTTTTGGAGTATGTACCTGAAACTGTCTACAGAGTTTCAAAGCACTATGTCAGAATGCACCAACATATGCCTATCATTTATGTTCAACTGTATGTGTACCAGATATGCCGGGGTTTAAATTATTTGCATCATGTGATCGGAGTCTGTCATCGGGACATCAAACCCCAGAATCTATTGGTTAATACCCAGACTCATCAATTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAATTGAATACACAACTGCTATTGATATTTGGTCTGCTGGTTGTGTTTTGGCTGAGCTTCTTCTAGGACATCCAATGTTTCCTGGAGAGAGTGGGGTTGATCAGTTGGTGGAGATCATTAAGATCTTGGGAACGCCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGGTTTTTCACAAGAAGATGCCTCCAGAAGCAGTGGATCTAGTGGCAAGGATGCTTCAATATTCACCAAATCTACGTTGCACTGCTTTGGAAGCATGTGCACACCCTTTCTTTGATGATCTGCGAGATCCAAATGCACGCCTGCCAAATGGGCGAGCACTGCCTCCTTTGTTCGACTTCACTGCTCAAGAACTGGCAGGCGCACCGGATGAGTTGCGCCGACGTCTCATTCCTGAGCATGCGAGAAGTTGA 1401 0.4147 MNVMRRLKSIASGRTSISSDPGGDCTTKRAKFDQETEGKVNGETYPNERCGKDQEQHVDASKESAIGTFNSNVSTMARTEKSGYDQLPKELNEMKIEDDKRKNNNEKDMEATVVNGNGTETGQIITTSIGSRDGQSKQAISYMAERVVGTGSLAKCLESGEAVAIKKVLQDKRYKNRELQVMRMLDHTNVLRLKHCFYSAAEKDELYLNLVLEYVPETVYRVSKHYVRMHQHMPIIYVQLYVYQICRGLNYLHHVIGVCHRDIKPQNLLVNTQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGAIEYTTAIDIWSAGCVLAELLLGHPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKKMPPEAVDLVARMLQYSPNLRCTALEACAHPFFDDLRDPNARLPNGRALPPLFDFTAQELAGAPDELRRRLIPEHARS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0812 466 MobiDBLite consensus disorder prediction 8 56 - -
Ssu3g0812 466 ProSiteProfiles Protein kinase domain profile. 142 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0812 466 SMART serkin_6 142 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0812 466 Gene3D Transferase(Phosphotransferase) domain 1 217 465 - -
Ssu3g0812 466 PANTHER SHAGGY-LIKE KINASE 6 466 - -
Ssu3g0812 466 SUPERFAMILY Protein kinase-like (PK-like) 142 446 IPR011009 -
Ssu3g0812 466 Pfam Protein kinase domain 147 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0812 466 MobiDBLite consensus disorder prediction 9 23 - -
Ssu3g0812 466 CDD STKc_GSK3 140 424 IPR039192 -
Ssu3g0812 466 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 466 - -
Ssu3g0812 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Ssu3g0812 466 Gene3D Phosphorylase Kinase; domain 1 127 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0812 Ssu-Chr3 19507027 19511476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0812 158 426 MAP Kinase Gene Family AT3G59790 35.018 5.82e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Ssu3g0812 Pkinase 5.4e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0812 K00924 - gmx:100786458 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0812 3 19507027 19511476 Ssu3g0812 3 19507027 19511476 ECH