Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0811 ATGAGTTTTGGGGGGTTTCTTGAGAGCAAACAAAGTGGTGGAAGTGCTAGGATCGTAGCAGATACTCCTTTCAGCAACGGTTCCAACCACAGCAACAGCATCAGCAACGATATAATGCCCTCTGGTGCAATCTCGCAGCCTCGTTTAGCCACACCTAGTCTGTCCAAATCCATGTTCAACTCTCCTGGCCTTTCTCTTGCACTTCAAAGTGATATAGATGGACAAGGGGATGTGAACAGATTAATGCCCGagaattttgagcaaaatggtttGAGAAGGAACCGGGAAGAGGAGCATGAAAGCAGATCTGGCAGTGATAACATGGACGGTGCTTCTGGTGATGATTTTGATGCTGCCGACAACCCACCAAGAAAAAAGCGCTATCACCGACACACTCCTCAGCAAATTCAAGAACTTGAAACGCTGTTCAAGGAGTGTCCTCACCCGGATGAGAAGCAAAGGCTCGAACTCAGCAGAAGGCTTAATTTGGAAACGAGGCAAGTAAAGTTTTGGTTCCAAAATCGTAGAACACAAATGAAGACACAATTGGAACGCCACGAGAACTCGCTACTAAGGCAAGAGAATGACAAGCTTAGAGCGGAGAACATGTCTATGAGGGAAGCTATGAGGAATCCTATTTGCTCAAACTGTGGAGGTCCTGCAATGATTGGTGAGATTTCCCTTGAAGAACAGCACCTCAGGATTGAGAATGCTAGATTGAAGGATGAGCTAGACCGTGTTTGTGCACTCGCTGGCAAGTTTTTGGGTCGCCCCATTTCTTCTTTGGCAAGCTCAATTGGGCCTCCATTGCCAAACTCAAGTTTGGAGCTTGGGGTTGGGAGCAATGGTTTTGGAGGTTTGAGCACTGTGCCTCCAACATTGCCTGATTTTGGGGTGGGGATTTCAAGCCCCTTAGGGATGGTGTCACCTTCAACTAGACCAACAACAACTGTGGTGGCTCCTGGCTTTGACAGATCAGTGGAGAGGTCTATTGTTCTGGAACTTGCTTTGGCTGCAATGGATGAGTTGGTGAAGATGGCTCAGACTGGGGAGCCTCTTTGGATCAGGAGTTTGGAAGGGGGAAGGGAAATTCTCAACCATGAAGAATACACAAGGACAATGACTCCTTGCATTGGGTTGAGACCCAATGGTTTTGTCACTGAGGCCTCTAGACAAGCTGGCATGGTCATCATAAACAGCTTGGCCCTTGTTGAAACACTAATGGACTCGAATCGATGGTCAGAGATGTTCCCTTATATGATTGCTAGAACCTCCACCGCTGAAGTGATATCTAATGGAATAAATGGAACTAGAAATGGTGCCCTTCAACTAATGCAAGCTGAACTTCAAGTCCTTTCGCCCTTGGTTCCTGTTCGTGAGGTCCATTTTCTACGCTTTTGCAAGCAGCACGCAGAGGGGTTATGGGCTGTGGTAGATGTGTCTATAGATACCATCCGAGAAACTTCTGGTGCACCTACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGCTGCGTGGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAACATGCAGAATACGACGAAAGCCAAGTTCACCAGCTCTACAGGCCCTTGTTGAGCTCAGGCATGGGGTTTGGTGCGCAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCTTAGCCATCCTAATGTCCTCAGCAGTTCCCTCTAGAGAACATTCGGCAATAAGCTCAGGGGGAAGGCGCAGCATGTTGAAGCTGGCGCAGCGCATGACGAACAATTTCTGCGCGGGTGTTTGCGCGTCGACGGTGCACAAGTGGAACAAGCTGAACGCAGGGAATGTGGGAGAGGATGTGAGGGTGATGACGAGGAAGAGCGTGGATGACCCGGCGAGCCGCCGGGGATCGTGCTCAGTGCGGCCACCTCCACTCTTCGACTTCCTCCGCAACGAGAGGCTCCGAAGCGAGTGGGACATCCTCTCTAACGGTGGACCCATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGCGTCTCCCTCCTCCGAGCCAGTGCTATGAATGCGAACCAGAGCAGCATGTTGATTTTGCAGGAGACGTGCACGGACGCGTCGGGGTCGCTTGTGGTGTACGCGCCGGTGGACATCCCCGCCATGCACGTGGTGATGAACGGCGGCGACTCTGCTTACGTGGCGCTCCTTCCGTCGGGATTCGTCATCGTGCCAGACGGATCAGGCAGCGGCGGCGAAGAGCACGGCGGCGCGTCGCTGCCGAGGGCGAGTGGGTGCCTCCTGACGGTGGCGTTTCAGATCCTCGTGAACAGCCTTCCGACGGCGAAGCTCACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATTTCGTGCACCGTGCAGAAGATAAAAGCAGCGCTTCACTGCGAGAGCTGA 2433 0.5146 MSFGGFLESKQSGGSARIVADTPFSNGSNHSNSISNDIMPSGAISQPRLATPSLSKSMFNSPGLSLALQSDIDGQGDVNRLMPENFEQNGLRRNREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELETLFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLASSIGPPLPNSSLELGVGSNGFGGLSTVPPTLPDFGVGISSPLGMVSPSTRPTTTVVAPGFDRSVERSIVLELALAAMDELVKMAQTGEPLWIRSLEGGREILNHEEYTRTMTPCIGLRPNGFVTEASRQAGMVIINSLALVETLMDSNRWSEMFPYMIARTSTAEVISNGINGTRNGALQLMQAELQVLSPLVPVREVHFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPSREHSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPASRRGSCSVRPPPLFDFLRNERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFVIVPDGSGSGGEEHGGASLPRASGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0811 810 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Ssu3g0811 810 ProSiteProfiles START domain profile. 325 561 IPR002913 GO:0008289
Ssu3g0811 810 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 70 807 IPR042160 -
Ssu3g0811 810 MobiDBLite consensus disorder prediction 75 132 - -
Ssu3g0811 810 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Ssu3g0811 810 Gene3D - 401 555 IPR023393 -
Ssu3g0811 810 SUPERFAMILY Bet v1-like 328 558 - -
Ssu3g0811 810 CDD START_ArGLABRA2_like 329 557 - -
Ssu3g0811 810 SUPERFAMILY Bet v1-like 579 797 - -
Ssu3g0811 810 SMART HOX_1 123 186 IPR001356 GO:0003677
Ssu3g0811 810 Coils Coil 176 211 - -
Ssu3g0811 810 MobiDBLite consensus disorder prediction 1 56 - -
Ssu3g0811 810 Gene3D - 112 198 - -
Ssu3g0811 810 Pfam START domain 334 558 IPR002913 GO:0008289
Ssu3g0811 810 SMART START_1 334 558 IPR002913 GO:0008289
Ssu3g0811 810 CDD homeodomain 124 182 IPR001356 GO:0003677
Ssu3g0811 810 SUPERFAMILY Homeodomain-like 108 182 IPR009057 -
Ssu3g0811 810 Pfam Homeodomain 125 180 IPR001356 GO:0003677
Ssu3g0811 810 MobiDBLite consensus disorder prediction 89 105 - -
Ssu3g0811 810 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 70 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0811 Ssu-Chr3 19462576 19468477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0811 1 810 Homeobox Transcription Factor Family AT3G61150 63.126 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu3g0811 START 1.4e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0811 K09338 - gmx:100787537 1419.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0811 3 19462576 19468477 Ssu3g0811 3 19462576 19468477 ECH
Ssu4g2727 4 69725202 69733538 Ssu3g0811 3 19462576 19468477 ECH