Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0809 ATGTCCTCATCAACGAAGCAGGTGGCTAGAAAACTTGGCGATACAAATCTTCCTCGTCCATGGAGTCGATATTCTAAAAAGAAACACAATAACGTGACAGCCATAGATGCAAATAAACATGCTAGAGCTAAAGGAGAAGGAGACAAGTCTAAGGGCATTGTTGATATTGATGACCCACAACTTCAAGATTTTCTTCAGGTCATGCAACCTCGGGCTAGGTCTAAATTGTGGGCCAATGATACATCCATTGCATGCAACGTTGGCAACAACCAAGCAATATCAAATAAGGACAGCAAAGCCACATTAGATGTAATCCATCCCATCTTAGTTCAACTTCCAAATGATCCTAAACACAAAAAGTCATGTGCACTTGAACATGATGAAGTAGTTTCTGACATGGATTATTTCAAGAGAAGAATGACAAAGGAGTGGTCTGATTCTGAAAGTAGTGATGACAATGACGACAATGATTCAATGTGcattgatgatgatgacaaAGACAATCATAGTCATGCTAGCGAACATGAAGAAAATTGCAATTATATTAACCCTTTCAAAGGAACCCCAAGACACGGGGCTCAAGAGTTAGATCTAGAGGCTCAAGTGAATGTAACTGAGCAACAGGGCCAATCATCAAATCCTGAAGATGAGAAAGGAGTTTTCGAGTCCTGTCGACTGTTTGTCCGTAATCTGCCATACACAACCACTGAGCAAGAACTGCAACAGCATGTCAGTAGGGAGCTCTTGCCTGCCAATAAGTTTGGTGGTGGTGCCTTAGAGGTTCATCTGGTTGTCGATAAAAGTACAAAACGATCCAAAGGAATagcatatattcttttttcagGTCCAGAATTTGCAGCCAGGGCACTAGAAAAGTTAGACCATTCAACCCTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATACAAAGACCTTCAAACAAAATAGAGAACAATATTTTGAAGGTCCAAAACTCTAAAACATTCAAACAACGGAGAGTGGAAGAGAGGAAATCAGCTGAAGCCAGCGGAGACACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGACACAGTTGTGGAAAACATTGGTCGCAAATATGGCATTAGTAAAAGTGATTTACTTGATCAAAAAGCTGACGATCATGCTGTTTGCATTGCTCTGGGAGAAGCTCAAGTGATTTCAGAGACAAAAAAGGCACTTAAAGATGCTGGAGTGAATGTGGAGTCTTTGGAGGAAATTGCTAATAGCAAAGTTGATGGCTTGAAAAGAAGTAACCATGTGATTTTAGTGAAGAACTTGCCCTATGGTTCGACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAAACTTTGGCCCTGGTTGTTTTCCTCGAACCAGCTGAAGCTAAAGCAGCTTTTAGAGGTTTTGCTTACAAGTGCTACaaGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGTCAAAGCTCAACatctaaaaataatgaaatgaatagtggaattgatgaaaatgatgcCAAGCGGCTGGTATTGGAGCAAAATGTAGAAAGAATATCAGATGTAGATATTGATCCAGACAGAGTAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACAACATACGAGAGTTTGAGGAAACATTTTAGTGAACACATGAAAAAGGGTGCAATTTTGAGTGTCAAGGTGAAGAAGCAtttgaaaaatggaaaaaatgtttCTAGGGGTTATGGATTTGTTGAGTTTGACTCCACAGAGACTGCTACGAATGTTTGCAGAGATTTACAGgGTACTGTTTTGGACGGGCATGCTCTTATTTTACAACTTTGTCATGTCAAGAATGAGGGACAAGTACAAAAGACAGTTGAGAAGGACAAGAGTTCAACAAAATTGCTTGTAAGAAATGTTGCTTTCGAGGCAACAAAGAAGAGTCTCAGAGATTTGTTTAGCCCATTTGGCGAGATTAAAAGCTTAAGGTTGCCAATGGGGTTTAGACATCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAACAGGAAGCACAAAATGCTCTTGCAACACTTTCAAGAACTCACCTGTTTGGTAGGCATATGGTGATAGAGAGAGCGAAAGGTGGTGAGAGTTTGGATGAACTGCGGGCTCGAACAGCTGCTCAGTTTAGGGAACATAATGGATTTCAAAATGCTACGAAGTTATCCAAGAAAAGGAAGCACATCAGTATCTTATGA 2283 0.3907 MSSSTKQVARKLGDTNLPRPWSRYSKKKHNNVTAIDANKHARAKGEGDKSKGIVDIDDPQLQDFLQVMQPRARSKLWANDTSIACNVGNNQAISNKDSKATLDVIHPILVQLPNDPKHKKSCALEHDEVVSDMDYFKRRMTKEWSDSESSDDNDDNDSMCIDDDDKDNHSHASEHEENCNYINPFKGTPRHGAQELDLEAQVNVTEQQGQSSNPEDEKGVFESCRLFVRNLPYTTTEQELQQHVSRELLPANKFGGGALEVHLVVDKSTKRSKGIAYILFSGPEFAARALEKLDHSTLQGRLLHVMPAIQRPSNKIENNILKVQNSKTFKQRRVEERKSAEASGDTRAWNSLFMRPDTVVENIGRKYGISKSDLLDQKADDHAVCIALGEAQVISETKKALKDAGVNVESLEEIANSKVDGLKRSNHVILVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEAKAAFRGFAYKCYKDAPLYLEWAPSNILSQSSTSKNNEMNSGIDENDAKRLVLEQNVERISDVDIDPDRVEARSLFVKNLNFKTTYESLRKHFSEHMKKGAILSVKVKKHLKNGKNVSRGYGFVEFDSTETATNVCRDLQGTVLDGHALILQLCHVKNEGQVQKTVEKDKSSTKLLVRNVAFEATKKSLRDLFSPFGEIKSLRLPMGFRHHRGFAFVEYVTQQEAQNALATLSRTHLFGRHMVIERAKGGESLDELRARTAAQFREHNGFQNATKLSKKRKHISIL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0809 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 649 715 IPR000504 GO:0003723
Ssu3g0809 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 304 IPR000504 GO:0003723
Ssu3g0809 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 429 489 IPR000504 GO:0003723
Ssu3g0809 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 549 623 IPR000504 GO:0003723
Ssu3g0809 760 PANTHER RNA-BINDING PROTEIN 19-RELATED 8 743 - -
Ssu3g0809 760 Gene3D - 642 747 IPR012677 -
Ssu3g0809 760 Gene3D - 421 524 IPR012677 -
Ssu3g0809 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 547 630 IPR000504 GO:0003723
Ssu3g0809 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 647 723 IPR000504 GO:0003723
Ssu3g0809 760 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 8 743 - -
Ssu3g0809 760 CDD RRM6_RBM19_RRM5_MRD1 647 721 - -
Ssu3g0809 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 310 IPR000504 GO:0003723
Ssu3g0809 760 SUPERFAMILY RNA-binding domain, RBD 530 634 IPR035979 GO:0003676
Ssu3g0809 760 CDD RRM3_RBM19_RRM2_MRD1 225 306 - -
Ssu3g0809 760 CDD RRM5_RBM19_like 547 628 IPR034423 -
Ssu3g0809 760 SUPERFAMILY RNA-binding domain, RBD 642 726 IPR035979 GO:0003676
Ssu3g0809 760 SUPERFAMILY RNA-binding domain, RBD 210 317 IPR035979 GO:0003676
Ssu3g0809 760 MobiDBLite consensus disorder prediction 1 31 - -
Ssu3g0809 760 MobiDBLite consensus disorder prediction 141 191 - -
Ssu3g0809 760 SUPERFAMILY RNA-binding domain, RBD 424 512 IPR035979 GO:0003676
Ssu3g0809 760 SMART rrm1_1 648 719 IPR000504 GO:0003723
Ssu3g0809 760 SMART rrm1_1 428 495 IPR000504 GO:0003723
Ssu3g0809 760 SMART rrm1_1 225 306 IPR000504 GO:0003723
Ssu3g0809 760 SMART rrm1_1 548 626 IPR000504 GO:0003723
Ssu3g0809 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 427 499 IPR000504 GO:0003723
Ssu3g0809 760 MobiDBLite consensus disorder prediction 162 176 - -
Ssu3g0809 760 Gene3D - 540 641 IPR012677 -
Ssu3g0809 760 Gene3D - 132 319 IPR012677 -
Ssu3g0809 760 CDD RRM4_RBM19_RRM3_MRD1 427 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0809 Ssu-Chr3 19383534 19391170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0809 540 740 Eukaryotic Initiation Factors Gene Family AT1G49760 28.372 5.42e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0809 K14787 - gmx:100798742 1017.3