Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0793 ATGGTGGAAGATGGGGATGAGGTTGCAGTTGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTTGTCCTTGATAAAACAAGAGAGGTTAAGGGATTTGGTGGTAGATGGAAGATGATCATTGCGAAATTGGAACAGATCCCATCGCGATTATCAGACTTGTCAAGCCATCCATGCTTCGCCAAGAATGCTCTGTGCAAGGAGCAGTTGCAGGCTGTGTCAAAGACACTCGGGGAAGCGATTGAATTGGCTGAGTTGTGCATGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGCGATCTAGATGCATTGGCTGGGAAGCTTGATTTGAATTTGAGGGATTGTGGTCTGCTGATCAAGACTGGTGTGCTTGGTGAGGCTACTTTACCACTGGCTGTGTCTAGTTCTGCGGCAGAATCAGATGTTGCAACACACAGCAACATAAGGGAATTGCTGGCGCGCCTTCAGATCGGGCACTTGGAAGCAAAGCACAGAGCTTTAGATAGCGTGGTTGAGGCCATGAAGGAAGATGAAAAGAATGTTTTAGCTGTTCTTGGTCGCAGCAACATTGCTGCTTTGGTTCAATTGCTTACAGCCACGTCTCCCAGAATAAGAGAGAAAACGGTTACTGTTATATGCTTGCTTGCAGAATCTGGGAGCTGTGAAAATTGGCTAGTTTCTGAAGGAGTTCTACCGCCTCTCATAAGGCTTGTTGAATCAGGCAGTGCGGTGGGGAAAGAGAAGGCGACAATATCCCTCCAGAGGTTGTCGATGTCAGCCGAAACAGCCCGAGCAATCGTGGGACACGGTGGGGTTCGTCCTTTGGTTGAACTTTGTCAAACCGGCGATTCTGTGTCGCAGGCTGCGGCTGCATGTACTCTGAAGAACATATCAGCTGTTCCTGAGGTGAGACGAGCGTTGGCTGAAGAAGGGATTGTGAGGGTTATGATCAATCTGCTTAACTGTGGAATTCTTTTAGGTTCCAAAGAGCATGCAGCAGAGTGCTTGCAGAACCTCACTGCAAGCAATGAGAATCTAAGGAGGAGTGTTATATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCCGCCGTTGGAGCATTGAGGAATTTGGTTGGATCGGTTCCTGAGGAATCCTTGGTTTCCCTAGGTTTGATCCCCCGTTTGGTTCACGTGTTGAAGTCCGGATCCTTAGGTGCTCAGCAAGCTGCCACGGCCGCAATATGCCGGGTTTGCAGCTCCACTGATATGAAGAAAATGGTTGGTGAAGCTGGTTGCATCCCCCTCCTTGTGAAGATGCTTGAGGCCAAGTCAAACAGTGCTAGAGAGGTTGCTGCTCAAGCAATTGCAAGCTTGATGGTTGTGTCTCGGAATCGAAGTGAAGTTAAGAAGGACGATAAAAGTGTGCCAAACTTGGTTCAGTTGCTTGATCCAAGTCCCCAGAACACTGCAAAAAAATATGCAGTTACTTGCCTTGGATCGCTTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGGGCAATTGGATATCTGAAGAAACTCACTGAGATGGACATTCCTGGAGCTAAGAAGCTACATGAGCGGTTGGAAAGAGGGAAATTTAGAAGTTTGTTTGGcaagaaatag 1680 0.472 MVEDGDEVAVDARSTEDWLLHAQELVPVVLDKTREVKGFGGRWKMIIAKLEQIPSRLSDLSSHPCFAKNALCKEQLQAVSKTLGEAIELAELCMKEKYEGKLRMQSDLDALAGKLDLNLRDCGLLIKTGVLGEATLPLAVSSSAAESDVATHSNIRELLARLQIGHLEAKHRALDSVVEAMKEDEKNVLAVLGRSNIAALVQLLTATSPRIREKTVTVICLLAESGSCENWLVSEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARAIVGHGGVRPLVELCQTGDSVSQAAAACTLKNISAVPEVRRALAEEGIVRVMINLLNCGILLGSKEHAAECLQNLTASNENLRRSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVPEESLVSLGLIPRLVHVLKSGSLGAQQAATAAICRVCSSTDMKKMVGEAGCIPLLVKMLEAKSNSAREVAAQAIASLMVVSRNRSEVKKDDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKFRSLFGKK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0793 559 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 559 - -
Ssu3g0793 559 Gene3D - 333 542 IPR011989 -
Ssu3g0793 559 Pfam Armadillo/beta-catenin-like repeat 270 306 IPR000225 GO:0005515
Ssu3g0793 559 Pfam Armadillo/beta-catenin-like repeat 430 467 IPR000225 GO:0005515
Ssu3g0793 559 SMART arm_5 349 388 IPR000225 GO:0005515
Ssu3g0793 559 SMART arm_5 307 348 IPR000225 GO:0005515
Ssu3g0793 559 SMART arm_5 429 469 IPR000225 GO:0005515
Ssu3g0793 559 SMART arm_5 470 512 IPR000225 GO:0005515
Ssu3g0793 559 SMART arm_5 184 224 IPR000225 GO:0005515
Ssu3g0793 559 SMART arm_5 389 428 IPR000225 GO:0005515
Ssu3g0793 559 SMART arm_5 266 306 IPR000225 GO:0005515
Ssu3g0793 559 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 559 - -
Ssu3g0793 559 Gene3D - 144 332 IPR011989 -
Ssu3g0793 559 SUPERFAMILY ARM repeat 155 536 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0793 Ssu-Chr3 18836707 18838386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0793 399 542 U-box Gene Family AT3G54790 29.167 2.41e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0793 - - gmx:100781453 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0793 3 18836707 18838386 Ssu3g0793 3 18836707 18838386 ECH