Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0791 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTGTGTGCACCAGAATCATTTGTGGAAGGCTAAGAGGGGGTGTTGAATCTCGGATGATGTATGAGATTGAATCAAGAATTGATATAGAACAGCCAGAATATCATGTTAATGACCCTGAATCCGAACCTGTTCTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACGCAGTGTGTGATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGCATCATGCCCAAATGTGGCCACACGTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTGTCCGGTATGCCGCCTGCCATTGAAAAACTCTTCTGAAACAAAACATGTGAGACCTGTGACATTTACCCTGAGCCAGTCCCTTGACGAGTCTCACGCATCAGAAAGAAATGAAGATATTGAGAGACATGTTGAGCATACTGCTGCTAGTAACTCTTTACAACCAACTTCAGGAGAATAA 561 0.4278 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRIDIEQPEYHVNDPESEPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTLSQSLDESHASERNEDIERHVEHTAASNSLQPTSGE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0791 186 Pfam Ring finger domain 89 132 IPR001841 -
Ssu3g0791 186 SMART ring_2 90 131 IPR001841 -
Ssu3g0791 186 MobiDBLite consensus disorder prediction 154 186 - -
Ssu3g0791 186 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Ssu3g0791 186 PANTHER OS02G0676500 PROTEIN 1 174 - -
Ssu3g0791 186 MobiDBLite consensus disorder prediction 158 173 - -
Ssu3g0791 186 CDD RING-H2_EL5_like 89 132 - -
Ssu3g0791 186 PANTHER OS11G0150450 PROTEIN 1 174 - -
Ssu3g0791 186 SUPERFAMILY RING/U-box 80 138 - -
Ssu3g0791 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0791 Ssu-Chr3 18775855 18777566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0791 52 135 C3H Transcription Factor Family AT4G33565 36.905 8.81e-19 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0791 3 18775855 18777566 Ssu3g0791 3 18775855 18777566 ECH