Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0788 ATGTTTTCGCCTACCATTGTCGTAATTAAGCAGAAATCGATGGGTGTTGGTGGTAATTTCTGGGACCTGCTGAAGCCCTATGCGCGCAACGAAGGTTTTGATTTCTTAAGGAACAAGCGAGTTGCTGTGGACCTTTCGTTCTGGATCGTTCAGCACGAGAATGCCCTCAGGACGACCCATGTCAGAAAACCCCACCTCAGGCTTACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGGGCACTTCCAGTGTTCGTTGTTGATGGGACTCCATCGCCATTGAAAGCACGGGCCAGGATTGCAAGATATTTCCGGTCTTCTGGCATTGAATTGACTAGCTTGCCAGTGCCCGAAGAAGGTGTTTCAGCTGAGAGGAACTGCTTGTTTTCAAGTTTTGTTCAAGAATGTGTGGAACTGGTTGAACTACTTGGAATGCCTGTACTAAAGGCTAAAGGAGAAGCTGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCATTATAAAATGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTCGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGCGGGATTGGGCTTGATACTGCACTTCATTTTGTTAAAGCTTTTAGTGAAGATGATATATTGAATAGGTTACATGAGATAGGTAAAGGGAATACTTCACAAATTCCCATGTGCATTAGACTTGAGGACAATGTGGATATGGATGGGAACTCCCCAAATAGAAAACAACCTCATTGCTCATTCTGTGGGCATCCAGGCagcaaaaaaaatcatatgaaatttTCCTGTGAGTATTGTGTCACAAAGGATGACGAAGGTTGCCAGAGAAAACCAGAGGGTTTTAAATGTGATTGCTTCTCCTGTGGTATGAATAGGAAACATAAGGAGCaaaaaagattagaaaattGGCACACAAAAATTTGCATCAAGATTGCAGATGAACCAAACTTTCCCAAGGATGAAATCATTGATATGTATTTATGCAATGACAATGGTTACTTTTCTGGAAGTGATGGCCCTCACATTATATGGGGAAAACCCAATATTGAGATGCTGATTGAGTTTTTAAACTTCCATCAGCATTGGGAACCATCCTACGTTAGACAGATGATGTTTCCTATGATGTCCACCATCTTTTTGAGAGATATGACTACAACTATGGTAGAAGCTTTGTTATTTGGGCAATATGAGTTTGATTCCGTAGAGCGTGTGAAGACGAGATACGGATATCAGTTTTACGTGGTCAAGTGGAAATATGCAGGGAGCAACATTGCCTGTAAAATTCCATCAAAGGAATCTAATGTGCAACAAGATGTTATAGAGTGTGATGAAATGGTGGATCTACTAGATGACTGCGATGTCCCTGAGATTCACGAAGATGATGGATGTAGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGAGCTGCTTTCCCAGCAGAAGTCAAAAGATTTTGGCAGCAGCAGGAactgaaaagaagaaagaattcaACGTCAAGATctcaagaaaatgaaagatCAGCATCACCAAACTCAAGAAGTATCCAGCTAAACATTACAGAGTTCTACCCATCAACCAAAGTTAAACATCGTCAATCAAAACAAGGAGAAGAGTCATCCAAGAATACTGATAACCAAGGCGGTGGAGgttcaaaaatgaaaagaaaaatgtcaaGTCCTACTACTAAGCTTTCAAAATCTGTGAGGCGCCGCCTTTTATTTGACTAG 1869 0.3975 MFSPTIVVIKQKSMGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHENALRTTHVRKPHLRLTFFRTINLFSKFGALPVFVVDGTPSPLKARARIARYFRSSGIELTSLPVPEEGVSAERNCLFSSFVQECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDTALHFVKAFSEDDILNRLHEIGKGNTSQIPMCIRLEDNVDMDGNSPNRKQPHCSFCGHPGSKKNHMKFSCEYCVTKDDEGCQRKPEGFKCDCFSCGMNRKHKEQKRLENWHTKICIKIADEPNFPKDEIIDMYLCNDNGYFSGSDGPHIIWGKPNIEMLIEFLNFHQHWEPSYVRQMMFPMMSTIFLRDMTTTMVEALLFGQYEFDSVERVKTRYGYQFYVVKWKYAGSNIACKIPSKESNVQQDVIECDEMVDLLDDCDVPEIHEDDGCSFLLTDENMDLVGAAFPAEVKRFWQQQELKRRKNSTSRSQENERSASPNSRSIQLNITEFYPSTKVKHRQSKQGEESSKNTDNQGGGGSKMKRKMSSPTTKLSKSVRRRLLFD 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0788 622 SMART xpgineu 142 212 IPR006086 GO:0004518
Ssu3g0788 622 MobiDBLite consensus disorder prediction 536 622 - -
Ssu3g0788 622 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 14 608 - -
Ssu3g0788 622 MobiDBLite consensus disorder prediction 549 573 - -
Ssu3g0788 622 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 14 608 IPR006084 -
Ssu3g0788 622 CDD PIN_GEN1 15 216 - -
Ssu3g0788 622 SUPERFAMILY PIN domain-like 19 227 IPR029060 -
Ssu3g0788 622 Pfam XPG I-region 145 227 IPR006086 GO:0004518
Ssu3g0788 622 SMART xpgn3 14 110 IPR006085 GO:0004518
Ssu3g0788 622 Gene3D - 212 271 - -
Ssu3g0788 622 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 212 428 IPR036279 -
Ssu3g0788 622 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 141 158 IPR006084 -
Ssu3g0788 622 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 162 182 IPR006084 -
Ssu3g0788 622 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 84 103 IPR006084 -
Ssu3g0788 622 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 217 232 IPR006084 -
Ssu3g0788 622 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 38 52 IPR006084 -
Ssu3g0788 622 Pfam XPG N-terminal domain 14 105 IPR006085 GO:0004518
Ssu3g0788 622 Gene3D - 16 211 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0788 29 259 Core DNA Replication Machinery Family AT5G26680 28.400 7.33e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0788 K15338 - gmx:100779848 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0788 3 18751075 18756645 Ssu3g0788 3 18751075 18756645 ECH