Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0785 ATGTTGGTTGTTCCACTAGATTTAGCTATTACTCCAATGAGGGTGTTGCAAGATCCTCTTCTAGGACCAGCATGTAGAGCAATGTTTGAAGAAGGAGATGTAGATGACAGGTTATTAATGATGTTGTTACTGACTGTGGAGCGTTTGCGTAAGAATTCTCTATGGAAGCCGTACCTTGGTATGCTTCCAACCACTTTTGGAAATCCACTTTGGTTTAGTGATGATGAACTTAAAGAGCTAAGAGGAACAACATTATATCGTGCAACTGAATTGCAGAAGAAAAGCCTGCTTACTTTGTATGAAACTAAAGTGAAGGATATAGTGAAGAAACTTTTGACTCTTGATGGAAATTCAGAAATTGAGGTGTGCTTTGAAGATTTCCTTTGGGCAAATTCAGTATTTTGGAGCCGTGCTTTGAACATTCCAATGCCTCGTTCTTATGTATTTCCAGAAATGCAAGATGCTCATGACAGTTGCATTCCAGAAGCTGAGGAAAAAAGAAGCCAGGTTAAAAAATCTGACAATCTGACCAAGGAAGTGGCATGTAACACAATGACAGGAGACACTGTGTGGGTAGAGGGTCTTGTCCCTGGCATTGACCTTTGTAACCATGATCTGAAGCCAATAGCAACATGGGAAGTTGATGGAACTGGTTTAACAACAGGAGTTCCTTTCTCCATGTATCTTATTTCTGCTGCTCAAAGTCCCTGGCAGATTGATCAAGAAATTTCCATTAGTTATGGAAACAAGGGAAATGAGGAACTTCTGTATctgtatggttttgtcattgaTGATAACACAGATGACTATCTCATGGTCCACTATCCAGCAGAAGCACTTAATACTATTTCCTTTTCAGAGTCCAAAAGCCAGCTTCTTGAAGTGCAGAAGGCTGAAATGAGATGTCTTTTACCCAAAACTCTACTGGATAACGGGTTCTTTCCATTATGCACTCAAAGCAGTGGAGAAAATAACAAAGGCAAAGTTGACCAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAGATGCCATCTTATGCAAACAAGCTGGTGTTTCCTGAGAAATTTATGACTACTTTGAGGACCGTAGCCATGCAAGAAGATGAGCTTTTCAAGGTTTCCTCAATGCTGGAAGAGCTTGTTGGACCTGAAAGGGAGAGACAGCTATCAGATACAGATGTCCAGTCAGCAGTATGGGAGGTCTGTGGTGATTCTGGAGCTTTACAATTGCTTGTTGATCTTCTTCGTGTGAAGATGATGGATCTTGAAGAGAGTTCCGGAACAGATGAAAGTGACCTTAATTTGCTCAAGAAAGCCCTTATTACTGATAGCCAGGAAGATAGCAAACAATGCACAAGCAATTTAAGCACAAAGGCAAATGACTCAGAGGAACCAAAGTTGATGAGTAGAAACAAGTGGTCTGCTGTAGTATATCGGCGAGGCCAAAAGCAGCTAACTCGGTTGTTCTTGAAAGAAGCAGAACATGCTCTGCAGTTATCCCTGAATGAAGAAGAGGTGACTTCTCCTTGTTAA 1533 0.407 MLVVPLDLAITPMRVLQDPLLGPACRAMFEEGDVDDRLLMMLLLTVERLRKNSLWKPYLGMLPTTFGNPLWFSDDELKELRGTTLYRATELQKKSLLTLYETKVKDIVKKLLTLDGNSEIEVCFEDFLWANSVFWSRALNIPMPRSYVFPEMQDAHDSCIPEAEEKRSQVKKSDNLTKEVACNTMTGDTVWVEGLVPGIDLCNHDLKPIATWEVDGTGLTTGVPFSMYLISAAQSPWQIDQEISISYGNKGNEELLYLYGFVIDDNTDDYLMVHYPAEALNTISFSESKSQLLEVQKAEMRCLLPKTLLDNGFFPLCTQSSGENNKGKVDQVCNYSWSGQRKMPSYANKLVFPEKFMTTLRTVAMQEDELFKVSSMLEELVGPERERQLSDTDVQSAVWEVCGDSGALQLLVDLLRVKMMDLEESSGTDESDLNLLKKALITDSQEDSKQCTSNLSTKANDSEEPKLMSRNKWSAVVYRRGQKQLTRLFLKEAEHALQLSLNEEEVTSPC 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0785 510 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 1 504 - -
Ssu3g0785 510 Pfam SET domain 45 248 IPR001214 GO:0005515
Ssu3g0785 510 CDD SET_LSMT 1 262 - -
Ssu3g0785 510 MobiDBLite consensus disorder prediction 447 466 - -
Ssu3g0785 510 SUPERFAMILY SET domain 2 266 IPR046341 -
Ssu3g0785 510 MobiDBLite consensus disorder prediction 447 462 - -
Ssu3g0785 510 PANTHER SET DOMAIN-CONTAINING PROTEIN 1 504 - -
Ssu3g0785 510 Gene3D set domain protein methyltransferase, domain 1 1 262 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu3g0785 SET 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0785 - - gmx:100777394 927.161