Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0764 ATGAACATGGATATGGCTTGTAGTTTGCCGCAGTCAAGAATGTTACATGGAGGTGTGGGGACGAGTTACAGACACAGATCAGTTGGACAATTAGGTTGTTTTGATTTTAGAGGGAGGGGTTATGGTTGTGCGTTTTTTTGCAACTCGAGAAGTGTTTCAAGATTGCGTATTAGTGCGATGAGTGTTTCTGCTTGTTGGAATAATTCAAGAGTGGTCACTGGTAGGGAGTTTAAAGTTTTGAATATGAAGAGAAGTTTGTCTTGTAagaataataatctttttatgGGGTCTAGAGTAATTTGGTCGAAGTGCCAGGGTAATGATTCTTTAGCTTATGTTAATGGCAATGGCTGGAATGTTGATTATGTAGAAGGTTCAGGTGAGGATGCGGGATTGGGGCCTGTTTCTAGTACTGAATTGGATGCACCTTTGGAAGAAGAAGGGCAAGCTGGAAGGAAAGAAGGAGGGAGTGAAATAGGAGTAGTGGAACAAAGTGTAGATGAACTGAAAGAACTATTGCAAAAGGCCTTGAAGGAGCTAGAAGTAGCTCAAATAAATAGTACCATGTTTGAGgagaaggttaaaaaaatctcagaGACTGCCATTTCTTTGCATGATGAAGCAGTAAGTTCTTTGAGCAATGTTAATTCTACCCTTGACACCATCCAAGAAATAGCGAATGAAGAACTTATGGCCAAAGAAGCTGTCCAAAATGCAAGAATGGCTCTTTCATTAGCTGAGGCAAAGCTTCAAGTAGCCATAGAATCTTTGGAGGCTGCGAAAGAAGTTCGTGATTCAGCACAAGGTTCTAATGAGAGCAATGGTGATAAGGACATGGTCGAAGAGGAGAAAGCTATTTTGGTTGCTCAAGACGATATCAAGGAATGCCAGGCTAATTTAGCCAATTGTGAGGCAGAGCTGAGGCGCTTGCAAAATAGAAAGGAGGAGTTGCAGAAGGAAATGAGCAAATTGCAAGAAATTGCTGAAAAGGCTCAGCTGAATGCGGTGAAAGCTGAAGAGGATGTTACAAACATAATGCTTTTGGCAGAGGAAGCTGTTGCCTTTGAACTTGAGGCTACAAAACATGTAAATGATGCAGAGATTGCCTTACAGCGAGCAGATAAGTCTAATTCTAATTCAAATGCTGATACCATAGAAACTACACCAGCACAGGATGTTGTGGCTGTTCCTGAGGAGGAGAAAGTGGTTCAAGGTTTTTCTGATGTCACTGTTGAAAGAGACAGGGATATGGCAATTGATGATGAATCTTCGCTTGCCAAGTTATCACCTGAAACACTATCTGATAAAACCAGCCAAATTTTGGAAGACAAAACTCAGTCTGATTATTTAAGTGATAATGAGAATgctatgcaaaaaaaaaagcaggAAACACAGAAAGATTTGACCAGAGATAGTTCACCCTTAGTTCCTAAGGCATTATTGAAAAAGTCTTCTCGATTCTTTCCTGCATCATTCTTCTCTTTTACTGAAGATGGGACTGAGTTCACACCAGCATCAGTCTTCCAGGGCCTTGTATTATCTGTACAGAAGCAATTGCCCAAGCTGATATTTGGGTTATTGTTAATGGGAGCGGGGGTTGCCTTCTATGCTAATAGAGTGGAGAGGAATGCTCAGCTGCTTCCACAGGCAGATGTTATTATGACCAGTGTTGAAGAAGTTTCCTCTAGTGCAAAGCCTTTGGTTAGACAACTTCAGAAACTCCCcaagaaaatcaagaaaatcaTTGCATCATTACCTCATCAGGAGGTGAACGAGGAGGAAGCCTCCCTCTTTGACATGCTTTGGTTATTACTTGCAAGTGTTATATTTGTgccaatatttcaaaatatccCTGGAGGCAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTAATTGGGCCTTATGGTCTCTCTATCATTCGTCATGTTCATGGGACAAAAGCAGTAGCTGAATTTGGAGTTGTTTTCCTTCTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCACAGGTTTTGGCAACTGCTGTAGCTATTGGCTTGGTGGCTCGTTATATTTGTGGCCAACCTGGTCCTGCTGCTATTGTCATTGGGAATGGCCTAGCATTATCATCCACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGGCATGGCCGAGCTACTTTTTCTGTGTTACTTTTTCAGGATCTGGCTGTCGTGGTCTTGCTAATACTCATACCTCTTATTTCTCCTAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCCGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCAGGGGGACGATTGCTCCTTCGACCAATATACAAACAGGTTgcagaaaatcaaaatgcagaAATTTTCTCAGCCAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGTTGGGATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTCCCAGTCATTGCAGGCGCACTAGGACTCTTAATATGTGGCAAGACTCTCTTGGTTTCTTTGATGGGTAGAATGTTTGGGATTTCCCTCATTTCTGCCATCAGAGTTGGTCTTCTTCTTGCTCCTGGTGGAGAGTTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGTTTTTGTCCTTGAAAACTGTTTTTTATACCAAGAGTTATGTTTTATTAAGAGTAGTTTACTCTAG 2910 0.4065 MNMDMACSLPQSRMLHGGVGTSYRHRSVGQLGCFDFRGRGYGCAFFCNSRSVSRLRISAMSVSACWNNSRVVTGREFKVLNMKRSLSCKNNNLFMGSRVIWSKCQGNDSLAYVNGNGWNVDYVEGSGEDAGLGPVSSTELDAPLEEEGQAGRKEGGSEIGVVEQSVDELKELLQKALKELEVAQINSTMFEEKVKKISETAISLHDEAVSSLSNVNSTLDTIQEIANEELMAKEAVQNARMALSLAEAKLQVAIESLEAAKEVRDSAQGSNESNGDKDMVEEEKAILVAQDDIKECQANLANCEAELRRLQNRKEELQKEMSKLQEIAEKAQLNAVKAEEDVTNIMLLAEEAVAFELEATKHVNDAEIALQRADKSNSNSNADTIETTPAQDVVAVPEEEKVVQGFSDVTVERDRDMAIDDESSLAKLSPETLSDKTSQILEDKTQSDYLSDNENAMQKKKQETQKDLTRDSSPLVPKALLKKSSRFFPASFFSFTEDGTEFTPASVFQGLVLSVQKQLPKLIFGLLLMGAGVAFYANRVERNAQLLPQADVIMTSVEEVSSSAKPLVRQLQKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQNIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAVAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAVAIGLVARYICGQPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVIAGALGLLICGKTLLVSLMGRMFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQVFVLENCFLYQELCFIKSSLL 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0764 969 Coils Coil 159 186 - -
Ssu3g0764 969 MobiDBLite consensus disorder prediction 130 157 - -
Ssu3g0764 969 Pfam Sodium/hydrogen exchanger family 603 948 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu3g0764 969 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 604 884 IPR004771 GO:0006812|GO:0008324|GO:0016021
Ssu3g0764 969 MobiDBLite consensus disorder prediction 414 472 - -
Ssu3g0764 969 Coils Coil 286 341 - -
Ssu3g0764 969 Coils Coil 243 263 - -
Ssu3g0764 969 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 3 948 - -
Ssu3g0764 969 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 3 948 - -
Ssu3g0764 969 Gene3D - 593 958 IPR038770 -
Ssu3g0764 969 MobiDBLite consensus disorder prediction 454 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0764 Ssu-Chr3 18285005 18294380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0764 3 948 Inorganic Solute Cotransporters AT4G00630 60.973 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0764 - - gmx:100798822 1551.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0764 3 18285005 18294380 Ssu3g0764 3 18285005 18294380 ECH
Ssu3g0764 3 18285005 18294380 Ssu4g2754 4 70455652 70484636 PCT