Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0761 ATGCTGTGTTGTTTTCATGACTATAATTGCCGCACAGCAAAGTCTACTGATAAACAAAATGAGATGAATAAGGCCCCAAGCAGACTCTCGTCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTTCAAAAACAGTGTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTTCCCTGGATGGTGTCCTCTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAATTACCATCATGTACTCCAAGCTGCTGCTGCAAACAAGAAGAATGTCTCACCACCTCCTGAACCAGCTGAAGAAGAGCCACCAAAGCCAGAAGAAGAATCTGAGGAACATACAGAAGAAAAGTCTTAA 429 0.4429 MLCCFHDYNCRTAKSTDKQNEMNKAPSRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYASLDGVLYCRHHFQQLFMEKGNYHHVLQAAAANKKNVSPPPEPAEEEPPKPEEESEEHTEEKS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0761 142 ProSiteProfiles LIM domain profile. 38 98 IPR001781 -
Ssu3g0761 142 PANTHER OS06G0237300 PROTEIN 10 140 IPR045268 GO:0051015
Ssu3g0761 142 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 66 105 - -
Ssu3g0761 142 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 10 140 - -
Ssu3g0761 142 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 32 65 - -
Ssu3g0761 142 SMART lim_4 39 91 IPR001781 -
Ssu3g0761 142 MobiDBLite consensus disorder prediction 109 142 - -
Ssu3g0761 142 Gene3D Cysteine Rich Protein 35 102 - -
Ssu3g0761 142 Pfam LIM domain 40 95 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0761 Ssu-Chr3 18249837 18250999 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu3g0761 LIM 3.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0761 - - gmx:100779513 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0761 3 18249837 18250999 Ssu3g0761 3 18249837 18250999 ECH
Ssu3g0761 3 18249837 18250999 Ssu4g2755 4 70492318 70493495 PCT